SNORA80A Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, H/ACA box 80A
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent studies have provided intriguing insights into brain-expressed molecules that shape neurophysiological processes, as exemplified by detailed examinations of BAI2. In one study, proteolytic processing of BAI2 at its GPCR proteolysis site (GPS) was shown to be essential for receptor activation, with cleaved C-terminal fragments specifically triggering the NFAT pathway, thereby suggesting a tightly regulated mechanism for BAI2 function in the brain."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n \nAnother line of investigation revealed that BAI2 plays a regulatory role in controlling vascular endothelial growth factor (VEGF) transcription. This study demonstrated that BAI2 interacts with GA-binding protein subunits (GABPα/γ), acting as a transcriptional repressor of VEGF expression both under normal conditions and during cerebral ischemia."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n \nA separate genetic analysis employing ENU mutagenesis uncovered a hyperactivity phenotype in mice that was linked to a missense mutation (R619W) in BAI2. This mutation, which diminishes the receptor’s surface expression in mammalian cells, underscores the importance of proper BAI2 localization and function for normal behavioral phenotypes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n \nIt is important to note that although these abstracts offer considerable detail on the various roles of BAI2 in neural processes, none of them address or provide functional insights into SNORA80A. SNORA80A, as a small nucleolar RNA typically involved in guiding RNA modifications, does not feature in these studies. Consequently, while the mechanistic and biological actions of BAI2 have been well characterized in these works, the function of SNORA80A remains unexplored within this context.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Daisuke Okajima, Gen Kudo, Hiroshi Yokota "}, {"type": "b", "children": [{"type": "t", "text": "Brain-specific angiogenesis inhibitor 2 (BAI2) may be activated by proteolytic processing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Recept Signal Transduct Res (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3109/10799891003671139"}], "href": "https://doi.org/10.3109/10799891003671139"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20367554"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20367554"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Byung Chul Jeong, Mi-Young Kim, Ji Hee Lee, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Brain-specific angiogenesis inhibitor 2 regulates VEGF through GABP that acts as a transcriptional repressor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FEBS Lett (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.febslet.2005.12.086"}], "href": "https://doi.org/10.1016/j.febslet.2005.12.086"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16412436"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16412436"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "David J Speca, James S Trimmer, Andrew S Peterson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Whole exome sequencing reveals a functional mutation in the GAIN domain of the Bai2 receptor underlying a forward mutagenesis hyperactivity QTL."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mamm Genome (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00335-017-9716-5"}], "href": "https://doi.org/10.1007/s00335-017-9716-5"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28894906"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28894906"}]}]}]}
Synonyms SNORA80, ACA67
NCBI Gene ID 677846
API
Download Associations
Predicted Functions View SNORA80A's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORA80A's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORA80A's ARCHS4 Predicted Functions.

Functional Associations

SNORA80A has 403 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.

Click the + buttons to view associations for SNORA80A from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA80A gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA80A gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SNORA80A gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORA80A gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA80A gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORA80A gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SNORA80A gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of SNORA80A gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SNORA80A gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORA80A gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA80A gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORA80A gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of SNORA80A gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.