SNORA9 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, H/ACA box 9
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nNuclear receptor coactivator 4 (NCOA4) is emerging as a multifunctional regulator of intracellular iron balance through its role as a selective cargo receptor that directs ferritin to the autophagy–lysosome pathway (ferritinophagy). By binding ferritin and facilitating its degradation, NCOA4 ensures the recycling of iron needed for critical cellular functions such as energy metabolism and red blood cell production. Dysregulation of this pathway can disturb iron homeostasis, leading to tissue iron accumulation and anemia under conditions of iron deprivation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its iron–recycling function, NCOA4 and related nuclear coactivators have been implicated in the regulation of nuclear receptor signaling and even DNA replication. Studies in mouse embryos have documented dynamic NCOA4 expression suggestive of roles in developmental transcriptional regulation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " In parallel, investigations of androgen receptor–associated proteins (ARA70 isoforms) in prostate and breast cancer cells have demonstrated that distinct coactivator isoforms can differentially modulate hormone‐driven proliferation and tumor suppression."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "7", "end_ref": "9"}]}, {"type": "t", "text": " Moreover, direct interactions of NCOA4 with components of the DNA replication machinery, such as MCM7, reveal a checkpoint function where NCOA4 helps prevent unscheduled origin activation and replication stress."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nA major emerging aspect of NCOA4’s function is its influence on ferroptosis, a form of iron–dependent cell death driven by lipid peroxidation. Enhanced NCOA4–mediated ferritinophagy increases the labile iron pool, thereby promoting oxidative damage in diverse pathological contexts including ischemic stroke"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": ", sepsis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": ", and the development of anemia and ineffective erythropoiesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": " In addition, NCOA4 contributes to chondrocyte ferroptosis associated with osteoarthritis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "14"}]}, {"type": "t", "text": ", and its actions are implicated in the pathogenesis of ischemic acute kidney injury by promoting ferritin degradation via interactions with immune signaling proteins."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "15"}]}, {"type": "t", "text": " Altered ferritinophagy has also been observed in retinal injury"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "16"}]}, {"type": "t", "text": ", paraquat intoxication"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "17"}]}, {"type": "t", "text": ", and intestinal ischemia–reperfusion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "18"}]}, {"type": "t", "text": " Recent work further shows that post‐ischemic lactylation of NCOA4 in hippocampal neurons enhances its stability, thereby promoting both ferritinophagy and glycolysis that exacerbate cerebral injury"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "19"}]}, {"type": "t", "text": ", while a FOXO1–NCOA4 axis has been implicated in cisplatin–induced auditory neuron ferroptosis and associated hearing loss."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "20"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional studies underscore the tissue–specific regulation and broader impact of NCOA4 on cell fate. In the liver, NCOA4 facilitates the mobilization of iron stores following phlebotomy—a process regulated by hypoxia–inducible factors—to enable iron redistribution during stress."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "21"}]}, {"type": "t", "text": " In parallel, investigations into hepatocyte senescence in non–alcoholic fatty liver disease suggest that alterations in autophagic processes, potentially linked to NCOA4 function, may contribute to degenerative changes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "22"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "William E Dowdle, Beat Nyfeler, Jane Nagel, et al. 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Synonyms SNORA9A, ACA9
NCBI Gene ID 677798
API
Download Associations
Predicted Functions View SNORA9's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORA9's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORA9's ARCHS4 Predicted Functions.

Functional Associations

SNORA9 has 1,668 functional associations with biological entities spanning 4 categories (molecular profile, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.

Click the + buttons to view associations for SNORA9 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA9 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA9 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SNORA9 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA9 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORA9 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA9 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORA9 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SNORA9 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SNORA9 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SNORA9 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA9 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of SNORA9 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of SNORA9 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SNORA9 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORA9 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of SNORA9 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.