| HGNC Family | Non-coding RNAs |
| Name | small nucleolar RNA, C/D box 109B |
| Description | This gene encodes a C/D box-type small nucleolar RNA that is expressed predominantly in the brain. Expression of this RNA is not detectable in the brains of patients with Prader-Willi syndrome. [provided by RefSeq, Jun 2010] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough none of the provided studies mention SNORD109B itself, the collective body of work focuses extensively on the functions of somatostatin and particularly its receptor subtype 5 (SSTR5) in endocrine regulation. In the pancreas, SSTR5 plays a critical role in mediating somatostatin’s inhibitory actions on insulin (and, in some cases, glucagon) secretion, thereby impacting glucose homeostasis and insulin sensitivity. For example, genetic ablation of SSTR5 in mice results in increased pancreatic insulin content, altered responses to somatostatin analogs, improved insulin sensitivity under high‐fat feeding, and significant changes in circulating hormone levels—all of which underscore its pivotal role in metabolic regulation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "7"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAt the cellular and molecular levels, SSTR5’s signaling is tightly regulated by mechanisms that control receptor trafficking, internalization, and degradation. Detailed structural and promoter analyses reveal that SSTR5 contains a PDZ ligand motif which, although not essential for plasma membrane targeting or internalization, is crucial for preserving receptor integrity post-endocytosis. Furthermore, interactions with PDZ-domain proteins (such as SNX27, PIST, and FLNA) modulate SSTR5 recycling, desensitization, and cross-talk with other receptor subtypes (e.g., SSTR2), thereby fine-tuning downstream signaling events like cAMP production and calcium oscillations."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "16"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond pancreatic islets, SSTR5-mediated signaling extends to diverse tissues and physiological systems. In the central nervous system and endocrine organs, alterations in the expression and regulation of somatostatin receptors modulate neuronal, pituitary, and hypothalamic functions. In the gastrointestinal tract, selective modulation of SSTR5 influences GLP-1 secretion and glycemic control, while in other tissues such as the kidney, Sertoli cells, cochlear hair cells, and even in inflammatory contexts like corneal wound healing, SSTR5 signaling has been shown to affect cellular responses and barrier integrity. Collectively, these findings highlight SSTR5 as a key mediator in a broad spectrum of metabolic, neuroendocrine, and inflammatory processes—and they illuminate promising therapeutic avenues. It is important to note that none of these studies address SNORD109B, meaning that the current literature focuses solely on SSTR5 and its regulatory networks."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "17", "end_ref": "25"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Mathias Z Strowski, Martin Kohler, Howard Y Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Somatostatin receptor subtype 5 regulates insulin secretion and glucose homeostasis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Endocrinol (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/me.2001-0035"}], "href": "https://doi.org/10.1210/me.2001-0035"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12511609"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12511609"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "T A Tirone, M A Norman, S Moldovan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pancreatic somatostatin inhibits insulin secretion via SSTR-5 in the isolated perfused mouse pancreas model."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pancreas (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/00006676-200304000-00025"}], "href": "https://doi.org/10.1097/00006676-200304000-00025"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12657967"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12657967"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "X P Wang, J Yang, M A Norman, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SSTR5 ablation in islet results in alterations in glucose homeostasis in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FEBS Lett (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.febslet.2005.04.069"}], "href": "https://doi.org/10.1016/j.febslet.2005.04.069"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15919085"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15919085"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "X P Wang, M Norman, J Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The effect of global SSTR5 gene ablation on the endocrine pancreas and glucose regulation in aging mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Surg Res (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jss.2005.05.024"}], "href": "https://doi.org/10.1016/j.jss.2005.05.024"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16026801"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16026801"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Sanjeet G Patel, Guisheng Zhou, Shi-He Liu, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Kit ligand and the somatostatin receptor antagonist, BIM-23627, stimulate in vitro resting follicle growth in the neonatal mouse ovary."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Endocrinology (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/en.2009-0762"}], "href": "https://doi.org/10.1210/en.2009-0762"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20056831"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20056831"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Guisheng Zhou, Shi-He Liu, Kelly M Shahi, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Subcellular sorting of the G-protein coupled mouse somatostatin receptor 5 by a network of PDZ-domain containing proteins."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0088529"}], "href": "https://doi.org/10.1371/journal.pone.0088529"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24523912"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24523912"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Donatella Treppiedi, Genesio Di Muro, Federica Mangili, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Filamin A is required for somatostatin receptor type 5 expression and pasireotide-mediated signaling in pituitary corticotroph tumor cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Endocrinol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.mce.2021.111159"}], "href": "https://doi.org/10.1016/j.mce.2021.111159"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33428965"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33428965"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Sara L Jepsen, Nicolai J Wewer Albrechtsen, Johanne A Windeløv, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Antagonizing somatostatin receptor subtype 2 and 5 reduces blood glucose in a gut- and GLP-1R-dependent manner."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "JCI Insight (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/jci.insight.143228"}], "href": "https://doi.org/10.1172/jci.insight.143228"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33434183"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33434183"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Yanni Li, Xiao Li, Chong Geng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Somatostatin receptor 5 is critical for protecting intestinal barrier function in vivo and in vitro."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Endocrinol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.mce.2021.111390"}], "href": "https://doi.org/10.1016/j.mce.2021.111390"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34224803"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34224803"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Jun Liu, Shuoya Huang, Ruoxun Yu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "TRPV1"}, {"type": "a", "children": [{"type": "t", "text": "sup"}], "href": "sup"}, {"type": "t", "text": "+"}, {"type": "a", "children": [{"type": "t", "text": "/sup"}], "href": "/sup"}, {"type": "t", "text": " sensory nerves modulate corneal inflammation after epithelial abrasion via RAMP1 and SSTR5 signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mucosal Immunol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41385-022-00533-8"}], "href": "https://doi.org/10.1038/s41385-022-00533-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35680973"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35680973"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "J P Hannon, C Petrucci, D Fehlmann, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Somatostatin sst2 receptor knock-out mice: localisation of sst1-5 receptor mRNA and binding in mouse brain by semi-quantitative RT-PCR, in situ hybridisation histochemistry and receptor autoradiography."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuropharmacology (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0028-3908(01)00186-1"}], "href": "https://doi.org/10.1016/s0028-3908(01"}, {"type": "t", "text": "00186-1) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11897118"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11897118"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "José L Ramírez, Rania Mouchantaf, Ujendra Kumar, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Expression of somatostatin receptors 3, 4, and 5 in mouse kidney proximal tubules."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Kidney Int (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1046/j.1523-1755.2003.00716.x"}], "href": "https://doi.org/10.1046/j.1523-1755.2003.00716.x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12472768"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12472768"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Padmesh S Rajput, Geetanjali Kharmate, Michael Norman, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Somatostatin receptor 1 and 5 double knockout mice mimic neurochemical changes of Huntington's disease transgenic mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0024467"}], "href": "https://doi.org/10.1371/journal.pone.0024467"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21912697"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21912697"}]}, {"type": "r", "ref": 21, "children": [{"type": "t", "text": "Ujendra Kumar "}, {"type": "b", "children": [{"type": "t", "text": "Immunohistochemical distribution of somatostatin and somatostatin receptor subtypes (SSTR1-5) in hypothalamus of ApoD knockout mice brain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Neurosci (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12031-012-9792-7"}], "href": "https://doi.org/10.1007/s12031-012-9792-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22581439"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22581439"}]}, {"type": "r", "ref": 22, "children": [{"type": "t", "text": "C E Moss, W J Marsh, H E Parker, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Somatostatin receptor 5 and cannabinoid receptor 1 activation inhibit secretion of glucose-dependent insulinotropic polypeptide from intestinal K cells in rodents."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Diabetologia (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00125-012-2663-5"}], "href": "https://doi.org/10.1007/s00125-012-2663-5"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22872212"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22872212"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Hasan Riaz, Aixin Liang, Muhammad Kasib Khan, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "UTS2B Defines a Novel Enteroendocrine Cell Population and Regulates GLP-1 Secretion Through SSTR5 in Male Mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Endocrinology (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/en.2019-00549"}], "href": "https://doi.org/10.1210/en.2019-00549"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31556942"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31556942"}]}]}]}
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| Synonyms | HBII-438B |
| NCBI Gene ID | 338429 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNORD109B has 196 functional associations with biological entities spanning 4 categories (molecular profile, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 14 datasets.
Click the + buttons to view associations for SNORD109B from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD109B gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD109B gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of SNORD109B gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD109B gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| CTD Gene-Chemical Interactions | chemicals interacting with SNORD109B gene/protein from the curated CTD Gene-Chemical Interactions dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD109B gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD109B gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SNORD109B gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SNORD109B gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of SNORD109B gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD109B gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of SNORD109B gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SNORD109B gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD109B gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |