SNORD112 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, C/D box 112
Description Small nucleolar RNAs (snoRNAs), like SNORD112, guide the formation of 2-prime O-methylation of ribosomal RNA (rRNA) and U small nuclear RNAs (snRNAs) through a specific RNA duplex at each modification site (Cavaille et al., 2002 [PubMed 12045206]).[supplied by OMIM, Nov 2010]
Summary
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In contrast, these studies focus on a distinct set of small RNAs—the piwi‐interacting RNAs (piRNAs)—and their effector proteins such as MILI and MIWI2, which together safeguard genome integrity in the male germline by mediating sequence‐specific silencing of transposable elements through de novo DNA methylation and chromatin remodeling."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional investigations described in these abstracts delineate the mechanistic underpinnings of piRNA-directed transposon repression. Key proteins—including TDRD9, TEX15, EXD1, SPOCD1, and SPIN1—act sequentially or in concert to ensure that nascent retrotransposon transcripts are recognized and that the corresponding genomic loci are properly methylated. These multi-layered processes are essential not only for neutralizing the potentially deleterious activity of transposable elements but also for establishing epigenetic landscapes crucial for proper gametogenesis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "6"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nThe scope of these studies extends beyond the germline to reveal roles for the piRNA pathway in diverse somatic contexts—including cell reprogramming, hematopoiesis, tumor biology, and pulmonary immunity—underscoring a broader significance of small RNA-mediated regulatory networks. Although SNORD112 is not examined in these investigations, its categorization within the family of noncoding RNAs suggests that analogous mechanisms of RNA-guided epigenetic modulation may operate in various cellular systems. In essence, while SNORD112’s specific functions remain to be explored within these contexts, the insights provided by the piRNA pathway research offer a conceptual framework in which small RNAs regulate gene expression and chromatin state in both germline and somatic tissues."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "7", "end_ref": "14"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Satomi Kuramochi-Miyagawa, Toshiaki Watanabe, Kengo Gotoh, et al. "}, {"type": "b", "children": [{"type": "t", "text": "DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Dev (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/gad.1640708"}], "href": "https://doi.org/10.1101/gad.1640708"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18381894"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18381894"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Vasily V Vagin, James Wohlschlegel, Jun Qu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Proteomic analysis of murine Piwi proteins reveals a role for arginine methylation in specifying interaction with Tudor family members."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Dev (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/gad.1814809"}], "href": "https://doi.org/10.1101/gad.1814809"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19584108"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19584108"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Masanobu Shoji, Takashi Tanaka, Mihoko Hosokawa, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Cell (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.devcel.2009.10.012"}], "href": "https://doi.org/10.1016/j.devcel.2009.10.012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20059948"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20059948"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Sergei A Manakov, Dubravka Pezic, Georgi K Marinov, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MIWI2 and MILI Have Differential Effects on piRNA Biogenesis and DNA Methylation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2015.07.036"}], "href": "https://doi.org/10.1016/j.celrep.2015.07.036"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26279574"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26279574"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Zhaolin Yang, Kuan-Ming Chen, Radha Raman Pandey, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Icariin induces apoptosis in mouse MLTC-10 Leydig tumor cells through activation of the mitochondrial pathway and down-regulation of the expression of piwil4."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Oncol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ijo.2011.1086"}], "href": "https://doi.org/10.3892/ijo.2011.1086"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21687940"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21687940"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Mona J Nolde, Ee-Chun Cheng, Shangqin Guo, et al. 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Synonyms 14Q(0)
NCBI Gene ID 692215
API
Download Associations
Predicted Functions View SNORD112's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORD112's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORD112's ARCHS4 Predicted Functions.

Functional Associations

SNORD112 has 205 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.

Click the + buttons to view associations for SNORD112 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD112 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SNORD112 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD112 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing SNORD112 from the GeneSigDB Published Gene Signatures dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD112 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SNORD112 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.