| HGNC Family | Non-coding RNAs |
| Name | small nucleolar RNA, C/D box 113-2 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nEmerging evidence suggests that SNORD113-2, a member of the C/D box small nucleolar RNA family, might play an indirect role in fine‐tuning posttranscriptional regulatory events in differentiated cells. In muscle fiber formation, for example, the timely stabilization of key myogenic mRNAs—mediated by the RNA‐binding protein HuR—depends on the regulated intracellular trafficking of such factors. Although SNORD113-2 is not explicitly mentioned in this context, its established role in ribonucleoprotein complex formation raises the intriguing possibility that it could contribute to the modulation of HuR’s function, thereby impacting the nuclear import dynamics orchestrated by Transportin 2 (TRN2) and influencing myogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n \nDisruption of precise nucleocytoplasmic transport is also at the heart of Hedgehog (Hh) pathway regulation where the localization of Gli transcription factors to primary cilia is critical for pathway activation. In this model, a nuclear import system based on the PY-type nuclear localization signal and karyopherinβ2 (Kapβ2) ensures proper Gli trafficking. Although the direct involvement of SNORD113-2 is yet to be established, the RNA modifications and RNP assembly functions commonly attributable to snoRNAs like SNORD113-2 might influence the stability or efficiency of these transport processes, thereby modulating Hh signal transduction in both developmental and disease contexts."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n\nIntegrating these insights, it is plausible to consider that SNORD113-2 could serve as a regulatory RNA that indirectly shapes cellular differentiation and signaling pathways by influencing the assembly or function of ribonucleoprotein complexes. Whether by modulating the posttranscriptional stabilization of mRNAs critical for myofiber formation or by fine-tuning the nuclear import machinery essential for Gli activation in Hedgehog signaling, SNORD113-2 represents a promising candidate for further mechanistic studies in the context of differentiated cell functions and oncogenic processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Kate van der Giessen, Imed-Eddine Gallouzi "}, {"type": "b", "children": [{"type": "t", "text": "Involvement of transportin 2-mediated HuR import in muscle cell differentiation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.e07-02-0167"}], "href": "https://doi.org/10.1091/mbc.e07-02-0167"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17475777"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17475777"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yuhong Han, Yue Xiong, Xuanming Shi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of Gli ciliary localization and Hedgehog signaling by the PY-NLS/karyopherin-β2 nuclear import system."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Biol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pbio.2002063"}], "href": "https://doi.org/10.1371/journal.pbio.2002063"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28777795"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28777795"}]}]}]}
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| Synonyms | 14Q(I-2) |
| NCBI Gene ID | 767562 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNORD113-2 has 196 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.
Click the + buttons to view associations for SNORD113-2 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD113-2 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD113-2 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD113-2 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD113-2 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SNORD113-2 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of SNORD113-2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD113-2 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of SNORD113-2 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SNORD113-2 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD113-2 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |