| HGNC Family | Non-coding RNAs |
| Name | small nucleolar RNA, C/D box 113-3 |
| Description | Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough the provided abstracts do not specifically mention SNORD113‐3, they collectively describe the multifaceted roles of airway secretory proteins—primarily SPLUNC1 (short palate, lung, and nasal epithelium clone 1) and its related family members such as BPIFA1—in pulmonary host defense. These studies demonstrate that SPLUNC1 and BPIFA1 are secreted by the respiratory epithelium where they exert direct antimicrobial and antiviral effects. They inhibit the growth of bacteria (for example, Mycoplasma pneumoniae, Klebsiella pneumoniae, and Burkholderia cenocepacia), prevent bacterial biofilm formation by modulating airway surface tension, and even restrict viral entry, thereby reducing the overall pathogen burden in the lungs. In addition, these proteins are upregulated via pathogen‐recognition receptors (e.g., TLR2) to mount an immediate defense response, while simultaneously modulating neutrophil activity and cytokine production to fine‐tune the immune response."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "7"}]}, {"type": "t", "text": "\n \nIn addition to these direct antimicrobial actions, the studies highlight an important immunomodulatory role for these epithelial proteins under both infectious and allergic conditions. Reduced expression of SPLUNC1 in the context of a Th2 cytokine milieu or allergic inflammation is associated with impaired bacterial clearance, enhanced recruitment of inflammatory cells (including eosinophils and myeloid-derived suppressor cells), and increased airway hyperresponsiveness. For example, diminished levels lead to defects in neutrophil activation and elastase activity, thereby exacerbating lung injury and contributing to chronic airway diseases such as asthma and otitis media."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "13"}]}, {"type": "t", "text": "\n \nDetailed tissue localization studies further underscore that these secreted proteins are predominantly expressed within the nasal passages, upper airways, and submucosal glands—sites that serve as the first line of defense against inhaled pathogens. Their regulated expression under both pathogen challenge and inflammatory stimuli, as well as their interactions with other membrane components (such as the epithelial sodium channel in cystic fibrosis), not only contribute to effective microbial clearance but also may play roles in tumor suppression and the maintenance of overall airway homeostasis. Notably, other protective agents such as CC16 are emerging as complementary mediators in the lung’s innate immune repertoire."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "14", "end_ref": "16"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "E E LeClair, V Nomellini, M Bahena, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cloning and expression of a mouse member of the PLUNC protein family exclusively expressed in tongue epithelium."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genomics (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ygeno.2003.09.015"}], "href": "https://doi.org/10.1016/j.ygeno.2003.09.015"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15028288"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15028288"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Hong Wei Chu, Jyoti Thaikoottathil, John G Rino, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Function and regulation of SPLUNC1 protein in Mycoplasma infection and allergic inflammation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.179.6.3995"}], "href": "https://doi.org/10.4049/jimmunol.179.6.3995"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17785838"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17785838"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Hong Wei Chu, Fabienne Gally, Jyoti Thaikoottathil, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SPLUNC1 regulation in airway epithelial cells: role of Toll-like receptor 2 signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Respir Res (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1465-9921-11-155"}], "href": "https://doi.org/10.1186/1465-9921-11-155"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21054862"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21054862"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yang Liu, Jennifer A Bartlett, Marissa E Di, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SPLUNC1/BPIFA1 contributes to pulmonary host defense against Klebsiella pneumoniae respiratory infection."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Pathol (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ajpath.2013.01.050"}], "href": "https://doi.org/10.1016/j.ajpath.2013.01.050"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23499554"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23499554"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Clemente J Britto, Qing Liu, David R Curran, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Short palate, lung, and nasal epithelial clone-1 is a tightly regulated airway sensor in innate and adaptive immunity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Respir Cell Mol Biol (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1165/rcmb.2012-0072OC"}], "href": "https://doi.org/10.1165/rcmb.2012-0072OC"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23470624"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23470624"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "K M Akram, N A Moyo, G H Leeming, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An innate defense peptide BPIFA1/SPLUNC1 restricts influenza A virus infection."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mucosal Immunol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/mi.2017.45"}], "href": "https://doi.org/10.1038/mi.2017.45"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28513596"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28513596"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Saira Ahmad, Christine Seul Ki Kim, Robert Tarran "}, {"type": "b", "children": [{"type": "t", "text": "The SPLUNC1-βENaC complex prevents Burkholderia cenocepacia invasion in normal airway epithelia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Respir Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12931-020-01454-5"}], "href": "https://doi.org/10.1186/s12931-020-01454-5"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32680508"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32680508"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Fabienne Gally, Y Peter Di, Sean K Smith, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SPLUNC1 promotes lung innate defense against Mycoplasma pneumoniae infection in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Pathol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ajpath.2011.01.026"}], "href": "https://doi.org/10.1016/j.ajpath.2011.01.026"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21514430"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21514430"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Jyoti V Thaikoottathil, Richard J Martin, Peter Y Di, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SPLUNC1 deficiency enhances airway eosinophilic inflammation in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Respir Cell Mol Biol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1165/rcmb.2012-0064OC"}], "href": "https://doi.org/10.1165/rcmb.2012-0064OC"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22499853"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22499853"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Jennifer A Bartlett, David K Meyerholz, Christine L Wohlford-Lenane, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Increased susceptibility to otitis media in a Splunc1-deficient mouse model."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dis Model Mech (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dmm.019646"}], "href": "https://doi.org/10.1242/dmm.019646"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25765466"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25765466"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Tongde Wu, Julianne Huang, Patrick J Moore, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of BPIFA1/SPLUNC1 as an epithelium-derived smooth muscle relaxing factor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncomms14118"}], "href": "https://doi.org/10.1038/ncomms14118"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28165446"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28165446"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Han Zhang, Xiaoling Li, Shan Liao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SPLUNC1 knockout enhances LPS-induced lung injury by increasing recruitment of CD11b+Gr-1+ cells to the spleen of mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/or.2017.6063"}], "href": "https://doi.org/10.3892/or.2017.6063"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29115527"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29115527"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Anil Kumar Jaiswal, Jyoti Yadav, Sangeet Makhija, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Short palate, lung, and nasal epithelial clone 1 (SPLUNC1) level determines steroid-resistant airway inflammation in aging."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Lung Cell Mol Physiol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajplung.00315.2021"}], "href": "https://doi.org/10.1152/ajplung.00315.2021"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34851736"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34851736"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Maslinda Musa, Kirsty Wilson, Le Sun, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Differential localisation of BPIFA1 (SPLUNC1) and BPIFB1 (LPLUNC1) in the nasal and oral cavities of mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Tissue Res (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00441-012-1490-9"}], "href": "https://doi.org/10.1007/s00441-012-1490-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22986921"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22986921"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Clemente J Britto, Naiqian Niu, Sara Khanal, et al. "}, {"type": "b", "children": [{"type": "t", "text": "BPIFA1 regulates lung neutrophil recruitment and interferon signaling during acute inflammation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Lung Cell Mol Physiol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajplung.00056.2018"}], "href": "https://doi.org/10.1152/ajplung.00056.2018"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30461288"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30461288"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Natalie Iannuzo, Holly Welfley, Nicholas C Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CC16 drives VLA-2-dependent SPLUNC1 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Immunol (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fimmu.2023.1277582"}], "href": "https://doi.org/10.3389/fimmu.2023.1277582"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38053993"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38053993"}]}]}]}
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| Synonyms | 14Q(I-3) |
| NCBI Gene ID | 767563 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNORD113-3 has 111 functional associations with biological entities spanning 3 categories (chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 3 datasets.
Click the + buttons to view associations for SNORD113-3 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of SNORD113-3 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SNORD113-3 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD113-3 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |