SNORD113-4 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, C/D box 113-4
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nZBTB1, a zinc finger and BTB domain-containing transcriptional regulator, is critical for normal lymphoid development. Early studies using chemically induced mutations and transgenic mouse models revealed that disruption of ZBTB1 impairs T cell development at early thymic stages, while also affecting B and NK cell differentiation under competitive conditions. These findings underscore the essential role of ZBTB1 in establishing a robust lymphoid compartment through its transcriptional regulatory functions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its function in lineage specification, ZBTB1 plays a pivotal role in maintaining genomic integrity during the replication of immune progenitors. Studies have demonstrated that in the absence of ZBTB1, cells show heightened sensitivity to replication stress, resulting in increased DNA damage and triggering p53-mediated apoptosis. This mechanism not only affects lymphoid cells but also impacts myeloid progenitors in competitive bone marrow environments, revealing that ZBTB1 is indispensable for protecting proliferating immune cells from replication-associated damage."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMoreover, ZBTB1 expression in lymphoid-primed multipotent progenitors prevents the activation of a default myeloid differentiation program, thereby ensuring proper lymphoid lineage commitment. Complementing its developmental functions, recent investigations in a T-cell lymphoma model using CRISPR-Cas9-mediated deletion in an EL4 cell line revealed that loss of ZBTB1 alters the expression profiles of numerous regulatory non-coding RNAs, including microRNAs and circular RNAs. These findings suggest that, in addition to its well-established role in normal hematopoiesis, ZBTB1 may also represent a potential molecular target for therapeutic intervention in lymphoid malignancies."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Owen M Siggs, Xiaohong Li, Yu Xia, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ZBTB1 is a determinant of lymphoid development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Med (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1084/jem.20112084"}], "href": "https://doi.org/10.1084/jem.20112084"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22201126"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22201126"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Divya Punwani, Karen Simon, Youngnim Choi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcription factor zinc finger and BTB domain 1 is essential for lymphocyte development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.1200623"}], "href": "https://doi.org/10.4049/jimmunol.1200623"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22753936"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22753936"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xin Cao, Ying Lu, Xianyu Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Zbtb1 Safeguards Genome Integrity and Prevents p53-Mediated Apoptosis in Proliferating Lymphoid Progenitors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.1600013"}], "href": "https://doi.org/10.4049/jimmunol.1600013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27402700"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27402700"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xianyu Zhang, Ying Lu, Xin Cao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Zbtb1 prevents default myeloid differentiation of lymphoid-primed multipotent progenitors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.11356"}], "href": "https://doi.org/10.18632/oncotarget.11356"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27542215"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27542215"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Jun-Hong Wang, Chun-Wei Shi, Yi-Yuan Lu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MicroRNA and circRNA Expression Analysis in a Zbtb1 Gene Knockout Monoclonal EL4 Cell Line."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Cell Infect Microbiol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fcimb.2021.706919"}], "href": "https://doi.org/10.3389/fcimb.2021.706919"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34290994"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34290994"}]}]}]}
Synonyms 14Q(I-4)
NCBI Gene ID 767564
API
Download Associations
Predicted Functions View SNORD113-4's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORD113-4's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORD113-4's ARCHS4 Predicted Functions.

Functional Associations

SNORD113-4 has 201 functional associations with biological entities spanning 4 categories (molecular profile, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.

Click the + buttons to view associations for SNORD113-4 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD113-4 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD113-4 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD113-4 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD113-4 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORD113-4 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SNORD113-4 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of SNORD113-4 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SNORD113-4 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORD113-4 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD113-4 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of SNORD113-4 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SNORD113-4 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD113-4 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.