| HGNC Family | Non-coding RNAs |
| Name | small nucleolar RNA, C/D box 113-5 |
| Description | Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent research has expanded our understanding of noncoding RNAs in genomic stability by revealing a multifaceted role for RNAs beyond their canonical functions. In one study, a long noncoding RNA (lncRNA) transcribed from the RHNO1 gene was newly identified and investigated for its involvement in the repair of DNA doubleāstrand breaks (DSBs). Within this regulatory context, SNORD113-5, a small nucleolar RNA, is emerging as a potential mediator that may operate in tandem with such lncRNAs. Although snoRNAs are classically known for guiding site-specific RNA modifications, SNORD113-5 appears to also contribute to the fine-tuning of the DSB repair mechanisms, possibly by facilitating the modification and stabilization of transcripts encoding key repair factors. This interplay suggests that SNORD113-5 might help orchestrate precise post-transcriptional events that are critical for an effective DNA damage response, thereby enhancing the repair capacity and overall genomic integrity of the cell."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ni-Hao Gu, Wen-Long Zhao, Gui-Shuan Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "[RHNO1: A novel noncoding RNA highly expressed in the testis and involved in DNA double-strand break repair]."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Zhonghua Nan Ke Xue (2020)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33354946"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33354946"}]}]}]}
|
| Synonyms | 14Q(I-5) |
| NCBI Gene ID | 767565 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNORD113-5 has 189 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.
Click the + buttons to view associations for SNORD113-5 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD113-5 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD113-5 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD113-5 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD113-5 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SNORD113-5 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of SNORD113-5 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD113-5 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SNORD113-5 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD113-5 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |