SNORD113-6 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, C/D box 113-6
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe interstitial cells of Cajal (ICC) act as the pacemakers in the gastrointestinal tract and are critically dependent on Kit receptor tyrosine kinase signaling for both their development and sustained function. In the study described (PubMed:"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ", differential gene expression in the small intestine of wild‐type versus W/W(V) mutant mice was explored, offering a backdrop for identifying molecules that underlie ICC maintenance. Although the primary focus was on Kit signaling and its impact on ICC populations, the broader gene expression profiling suggests that noncoding RNAs, including SNORD113-6, might be involved in post-transcriptional regulatory processes relevant to ICC physiology."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "SNORD113-6 is a member of the C/D box family of small nucleolar RNAs that typically function as guide molecules for site-specific methylation of target RNAs. By directing these modification events, SNORD113-6 may influence RNA stability, processing, and translation. Such methylation-modulated RNA turnover and processing events can have downstream effects on the expression of genes critical for the proper signaling and function of ICC, thereby contributing indirectly to gastrointestinal motility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "The integration of canonical signaling pathways—exemplified by the importance of Kit in ICC function—with the modulatory roles of noncoding RNAs like SNORD113-6 points to a multi-layered regulatory network in gastrointestinal tissues. By potentially fine-tuning the expression and processing of key transcripts, SNORD113-6 might help maintain the specialized phenotype of ICC, ensuring both the robustness of pacemaker activity and effective motor neurotransmission in the smooth muscle layers."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "I Takayama, Y Daigo, S M Ward, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Novel human and mouse genes encoding an acid phosphatase family member and its downregulation in W/W(V) mouse jejunum."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gut (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1136/gut.50.6.790"}], "href": "https://doi.org/10.1136/gut.50.6.790"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12010880"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12010880"}]}]}]}
Synonyms 14Q(I-6)
NCBI Gene ID 767566
API
Download Associations
Predicted Functions View SNORD113-6's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORD113-6's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORD113-6's ARCHS4 Predicted Functions.

Functional Associations

SNORD113-6 has 190 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.

Click the + buttons to view associations for SNORD113-6 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD113-6 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD113-6 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD113-6 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD113-6 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORD113-6 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORD113-6 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD113-6 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SNORD113-6 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD113-6 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.