SNORD113-9 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, C/D box 113-9
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe compendium of abstracts provided offers an extensive characterization of TET family dioxygenases and their central roles in converting 5‐methylcytosine to oxidized derivatives such as 5‐hydroxymethylcytosine, 5‐formylcytosine, and 5‐carboxylcytosine. These studies demonstrate that TET‐mediated oxidation is pivotal for active DNA demethylation, for remodeling chromatin and gene expression during processes such as embryonic stem cell maintenance, neural differentiation, immune cell lineage commitment, and other cell‐fate decisions. In addition, the regulation of TET activities by various interacting proteins, co-factors (such as vitamin C), and signaling pathways is shown to influence cell-specific epigenetic patterns and transcriptional variability."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther reports focus on how TET proteins coordinate with transcription factors and chromatin-modifying enzymes to shape neural networks, immune homeostasis, and genomic stability. In these studies, detailed mechanisms are described in contexts ranging from Tet3’s role in synaptic function and memory consolidation to TET loss-of-function contributing to neoplastic transformation and defective T regulatory cell stability. Such work emphasizes that epigenetic remodeling via TET enzymes is essential for proper gene regulation in diverse biological systems, involving dynamic interactions with cofactors and target gene loci."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "7", "end_ref": "23"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional investigations extend these findings to disease models and in vivo settings, addressing the roles of TET enzymes in metabolic regulation, neuronal circuit formation, stress response, genome integrity, and even direct lineage reprogramming. Together, these comprehensive studies underscore the multifaceted nature of TET-mediated DNA demethylation in controlling cellular identity and function. Notably, however, none of the abstracts provide any direct information regarding the function of SNORD113-9. Although SNORD113-9 is a member of the box C/D small nucleolar RNA family typically involved in RNA modification processes, the literature cited here does not discuss its role or regulatory function in the contexts of epigenetic modulation or gene expression. Thus, while these works shed light on TET enzymes as central players in epigenetic reprogramming, they do not address any functional aspects of SNORD113-9."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "24", "end_ref": "34"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Shinsuke Ito, Li Shen, Qing Dai, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Tet proteins influence the balance between neuroectodermal and mesodermal fate choice by inhibiting Wnt signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1617802113"}], "href": "https://doi.org/10.1073/pnas.1617802113"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27930333"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27930333"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Ryo Ito, Shogo Katsura, Hiroki Shimada, et al. 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Synonyms 14Q(I-9)
NCBI Gene ID 767569
API
Download Associations
Predicted Functions View SNORD113-9's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORD113-9's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORD113-9's ARCHS4 Predicted Functions.

Functional Associations

SNORD113-9 has 212 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 12 datasets.

Click the + buttons to view associations for SNORD113-9 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD113-9 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD113-9 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SNORD113-9 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD113-9 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD113-9 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD113-9 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORD113-9 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SNORD113-9 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORD113-9 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD113-9 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SNORD113-9 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD113-9 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.