SNORD114-9 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, C/D box 114-9
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough the provided body of literature does not mention SNORD114-9 directly, these abstracts collectively illustrate a network of transcriptional and post‐transcriptional regulatory pathways that center on the microphthalmia‐associated transcription factor (MITF) and its partners in a range of cell types—including melanocytes, osteoclasts, mast cells, and even cardiomyocytes. These studies detail how MITF integrates extracellular signals with chromatin and cofactor interactions (e.g., with SOX10, PU.1, NFATc1, and others) to mediate crucial processes such as melanogenesis, cell survival, differentiation, and even cell cycle exit in lineage‐committed cells."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional reports expand on this regulatory paradigm by demonstrating that MITF not only coordinates pigment synthesis and melanosome distribution in skin and ocular tissues but also functions in osteoclast differentiation and even in regulating mast cell homeostasis. Moreover, the interplay between MITF and other transcription factors, such as during the regulation of tyrosinase expression and post‐translational modifications (e.g., phosphorylation, sumoylation, caspase cleavage), further emphasizes its central role in cell‐type–specific gene regulation with implications for diseases such as melanoma, Waardenburg syndrome, and osteopetrosis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "6", "end_ref": "17"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther studies in this collection further delineate MITF’s cooperative and sometimes antagonistic interactions with signaling pathways—both intracellular (such as p38 MAPK, PI3K/AKT, or caspase-mediated events) and extracellular (e.g., c-Kit, RANKL, beta-adrenergic signals)—thereby defining a multifactorial circuit regulating differentiation, survival, and proliferation. These diverse findings underline that while numerous layers of gene regulation are well characterized for protein-coding and regulatory factors involved in these cellular systems, none of the reports address a role for SNORD114-9. Its function in modulating the expression or processing of key transcripts (including those regulated by MITF) is therefore not illuminated by this literature corpus."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "18", "end_ref": "27"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, while the abstracts provided offer a detailed exploration of MITF-driven transcriptional networks and their importance in pigmentation, osteoclast function, neural crest derivatives, and related processes—as well as the downstream signaling cascades modulating these events"}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "28", "end_ref": "44"}]}, {"type": "t", "text": ", the specific function of SNORD114-9 remains uncharacterized in these reports. Future research is needed to investigate whether this small nucleolar RNA plays a role—perhaps in the post-transcriptional regulation of transcripts or in alternative RNA processing events—that impacts the same pathways governed by MITF and its associated factors.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "S Shibahara, K Takeda, K Yasumoto, et al. 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Synonyms 14Q(II-9)
NCBI Gene ID 767585
API
Download Associations
Predicted Functions View SNORD114-9's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORD114-9's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORD114-9's ARCHS4 Predicted Functions.

Functional Associations

SNORD114-9 has 198 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.

Click the + buttons to view associations for SNORD114-9 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD114-9 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD114-9 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD114-9 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD114-9 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORD114-9 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORD114-9 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD114-9 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SNORD114-9 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.