SNORD115-12 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, C/D box 115-12
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe RFamide-related peptide system, exemplified by RFRP-3, plays a critical inhibitory role in the central regulation of reproduction. In mice, RFRP-3 directly targets both GnRH and kisspeptin neurons, with studies showing that RFRP-3 fibers closely appose approximately one‐quarter of GnRH cells and a smaller fraction of rostral periventricular kisspeptin neurons. These interactions occur predominantly via the receptor GPR147, as its expression is found in a subset of these neurons, while related receptors (e.g., GPR74) are absent. Additionally, the developmental expression of RFRP-3 shows distinct high and low expression subpopulations that are differentially regulated by sex steroids, underscoring its dynamic role in modulating the reproductive axis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nComplementary evidence demonstrates that the broader RFamide system involves multiple receptor subtypes with distinct distributions and functions. Quantitative autoradiography reveals species-specific patterns of neuropeptide FF receptor expression, with NPFF1 and NPFF2 subtypes contributing to functions such as thermoregulation and sensory modulation. Moreover, kisspeptin—traditionally known to signal via GPR54—has been shown to modulate neuronal activity in the arcuate nucleus through NPFF receptors, with pharmacological studies using agonists and antagonists (like RF9 and BIBP‐3226) confirming that RFamide peptides can exert both excitatory and inhibitory effects independent of canonical kisspeptin pathways."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to their central functions, RFamide-related peptides extend their regulatory influence to peripheral tissues that impact metabolic and reproductive homeostasis. RFRP-3 signaling via GPR147 has been implicated in enhancing pancreatic alpha cell survival under hyperglycemic and nutrient-deprived conditions, while in ovarian granulosa cells, it modulates steroidogenesis and can induce apoptosis—suggesting a role in follicle development. Furthermore, the deletion of its canonical receptor, NPFF1R, alters feedback responses to gonadal hormones and dampens the hypogonadotropic effects of metabolic stress, thereby linking the reproductive axis to energy balance. Although none of these abstracts explicitly mention SNORD115-12, the mechanistic insights provided by the RFRP-3 and RFamide receptor studies suggest that molecules within this regulatory network—including SNORD115-12, if functionally related—could contribute to the fine-tuning of neuroendocrine and metabolic processes."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "6", "end_ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Matthew C Poling, Joshua Kim, Sangeeta Dhamija, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Development, sex steroid regulation, and phenotypic characterization of RFamide-related peptide (Rfrp) gene expression and RFamide receptors in the mouse hypothalamus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Endocrinology (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/en.2011-2049"}], "href": "https://doi.org/10.1210/en.2011-2049"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22355072"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22355072"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Mohammed Z Rizwan, Matthew C Poling, Maggie Corr, et al. "}, {"type": "b", "children": [{"type": "t", "text": "RFamide-related peptide-3 receptor gene expression in GnRH and kisspeptin neurons and GnRH-dependent mechanism of action."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Endocrinology (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/en.2012-1133"}], "href": "https://doi.org/10.1210/en.2012-1133"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22691552"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22691552"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Christine Gouardères, Alain Puget, Jean-Marie Zajac "}, {"type": "b", "children": [{"type": "t", "text": "Detailed distribution of neuropeptide FF receptors (NPFF1 and NPFF2) in the rat, mouse, octodon, rabbit, guinea pig, and marmoset monkey brains: a comparative autoradiographic study."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Synapse (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/syn.10305"}], "href": "https://doi.org/10.1002/syn.10305"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14696013"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14696013"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Lionel Moulédous, Florent Barthas, Jean-Marie Zajac "}, {"type": "b", "children": [{"type": "t", "text": "Opposite control of body temperature by NPFF1 and NPFF2 receptors in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuropeptides (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.npep.2010.05.003"}], "href": "https://doi.org/10.1016/j.npep.2010.05.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20554321"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20554321"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Xinhuai Liu, Allan Herbison "}, {"type": "b", "children": [{"type": "t", "text": "Kisspeptin regulation of arcuate neuron excitability in kisspeptin receptor knockout mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Endocrinology (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/en.2014-1845"}], "href": "https://doi.org/10.1210/en.2014-1845"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25756309"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25756309"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Silvia León, David García-Galiano, Francisco Ruiz-Pino, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Physiological roles of gonadotropin-inhibitory hormone signaling in the control of mammalian reproductive axis: studies in the NPFF1 receptor null mouse."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Endocrinology (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/en.2014-1030"}], "href": "https://doi.org/10.1210/en.2014-1030"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24823392"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24823392"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Silvia Leon, Inmaculada Velasco, Maria J Vázquez, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Sex-Biased Physiological Roles of NPFF1R, the Canonical Receptor of RFRP-3, in Food Intake and Metabolic Homeostasis Revealed by its Congenital Ablation in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Metabolism (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.metabol.2018.07.003"}], "href": "https://doi.org/10.1016/j.metabol.2018.07.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30075164"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30075164"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Wencheng Zhang, Li Wang, Xinwen Yu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "RFamide-related peptide-3 promotes alpha TC1 clone 6 cell survival likely via GPR147."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Peptides (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.peptides.2018.07.009"}], "href": "https://doi.org/10.1016/j.peptides.2018.07.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30081043"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30081043"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Xingru Guo, Tianshu Dai, Shihao Wei, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Rfamide-related peptide-3(RFRP-3) receptor gene is expressed in mouse ovarian granulosa cells: Potential role of RFRP-3 in steroidogenesis and apoptosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Steroids (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.steroids.2023.109349"}], "href": "https://doi.org/10.1016/j.steroids.2023.109349"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38072091"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38072091"}]}]}]}
Synonyms HBII-52-12
NCBI Gene ID 100033449
API
Download Associations
Predicted Functions View SNORD115-12's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORD115-12's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORD115-12's ARCHS4 Predicted Functions.

Functional Associations

SNORD115-12 has 168 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.

Click the + buttons to view associations for SNORD115-12 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD115-12 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD115-12 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD115-12 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORD115-12 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORD115-12 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD115-12 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.