| HGNC Family | Non-coding RNAs |
| Name | small nucleolar RNA, C/D box 115-23 |
| Description | Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough none of the provided abstracts explicitly mention SNORD115‐23, the collection of studies offers a rich insight into the multifaceted functions of USP4, a deubiquitinating enzyme whose activities may serve as a conceptual parallel when considering regulatory RNAs. In several investigations, USP4 is shown to dynamically shuttle between the nucleus and cytoplasm to precisely modulate key signaling cascades. For example, USP4 deubiquitinates substrates that control proliferative and survival pathways, including the stabilization of ARF‐BP1 to downregulate p53 levels and the deubiquitination of TRAF6 to temper TLR/IL‐1R–mediated innate immune responses, while also interacting with the transforming growth factor–β (TGF‐β) receptor I at the plasma membrane to sustain TGF‐β signaling."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther studies extend the biological scope of USP4 activity to the regulation of tissue homeostasis and repair. In the liver, USP4 is implicated in fibrogenic processes through its role in maintaining TGF‐β receptor I levels—as part of an H19/miR‐148a/USP4 axis—and in modulating inflammatory and stress responses during nonalcoholic fatty liver disease and hepatic ischemia/reperfusion injury via regulation of TAK1/JNK signaling. Moreover, USP4 participates in renal water homeostasis by deubiquitinating aquaporin 2, and its inhibition has been shown to reduce pathological scarring through modulation of TGF‐β/Smad signaling."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "12"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its roles in stress and tissue homeostasis, USP4 influences cell differentiation and disease progression. In the context of myogenesis and immune regulation, USP4 acts as a modulator of myogenic regulatory factors and has been implicated in dampening inflammatory responses in conditions such as asthma, where it regulates T regulatory and Th17 cell balance. Furthermore, stabilization of USP4 by FBXO3 in breast cancer cells links its deubiquitinating activity to the promotion of metastasis via Twist1 protein stabilization, while its regulation of ribosome biogenesis and protein synthesis is critical for hematopoietic stem cell regeneration and leukemia progression."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "13", "end_ref": "15"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Tatiana A Soboleva, David A Jans, Melanie Johnson-Saliba, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Nuclear-cytoplasmic shuttling of the oncogenic mouse UNP/USP4 deubiquitylating enzyme."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M401394200"}], "href": "https://doi.org/10.1074/jbc.M401394200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15494318"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15494318"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Xinna Zhang, Franklin G Berger, Jianhua Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "USP4 inhibits p53 through deubiquitinating and stabilizing ARF-BP1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO J (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/emboj.2011.125"}], "href": "https://doi.org/10.1038/emboj.2011.125"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21522127"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21522127"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "FangFang Zhou, Xiaofei Zhang, Hans van Dam, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Ubiquitin-specific protease 4 mitigates Toll-like/interleukin-1 receptor signaling and regulates innate immune activation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M111.328187"}], "href": "https://doi.org/10.1074/jbc.M111.328187"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22262844"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22262844"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Long Zhang, FangFang Zhou, Yvette Drabsch, et al. "}, {"type": "b", "children": [{"type": "t", "text": "USP4 is regulated by AKT phosphorylation and directly deubiquitylates TGF-β type I receptor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Cell Biol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncb2522"}], "href": "https://doi.org/10.1038/ncb2522"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22706160"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22706160"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Sun-Il Yun, Kyeong Kyu Kim "}, {"type": "b", "children": [{"type": "t", "text": "Ubiquitin-specific protease 4 (USP4) suppresses myoblast differentiation by down regulating MyoD activity in a catalytic-independent manner."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Signal (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cellsig.2017.03.008"}], "href": "https://doi.org/10.1016/j.cellsig.2017.03.008"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28336234"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28336234"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Fangfang Zhou, Feng Xie, Ke Jin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "USP4 inhibits SMAD4 monoubiquitination and promotes activin and BMP signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO J (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.15252/embj.201695372"}], "href": "https://doi.org/10.15252/embj.201695372"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28468752"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28468752"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Yichao Zhao, Fang Wang, Lingchen Gao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Ubiquitin-Specific Protease 4 Is an Endogenous Negative Regulator of Metabolic Dysfunctions in Nonalcoholic Fatty Liver Disease in Mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hepatology (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/hep.29889"}], "href": "https://doi.org/10.1002/hep.29889"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29573006"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29573006"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Chao Xu, Yang Peng, Qin Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "USP4 positively regulates RLR-induced NF-κB activation by targeting TRAF6 for K48-linked deubiquitination and inhibits enterovirus 71 replication."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-018-31734-6"}], "href": "https://doi.org/10.1038/s41598-018-31734-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30194441"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30194441"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Jie Zhu, Zhongguang Luo, Yida Pan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "H19/miR-148a/USP4 axis facilitates liver fibrosis by enhancing TGF-β signaling in both hepatic stellate cells and hepatocytes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.27656"}], "href": "https://doi.org/10.1002/jcp.27656"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30362572"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30362572"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Jiangqiao Zhou, Tao Qiu, Tianyu Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "USP4 deficiency exacerbates hepatic ischaemia/reperfusion injury via TAK1 signalling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Sci (Lond) (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1042/CS20180959"}], "href": "https://doi.org/10.1042/CS20180959"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30622220"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30622220"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Sathish K Murali, Takwa S Aroankins, Hanne B Moeller, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Deubiquitylase USP4 Interacts with the Water Channel AQP2 to Modulate Its Apical Membrane Accumulation and Cellular Abundance."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cells (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/cells8030265"}], "href": "https://doi.org/10.3390/cells8030265"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30901874"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30901874"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Jie Zhang, Sijia Na, Shuting Pan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Inhibition of USP4 attenuates pathological scarring by downregulation of the TGF‑β/Smad signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2019.10370"}], "href": "https://doi.org/10.3892/mmr.2019.10370"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31173246"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31173246"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Xiaoxia Hou, Fangming Zhu, Yingmeng Ni, et al. "}, {"type": "b", "children": [{"type": "t", "text": "USP4 is pathogenic in allergic airway inflammation by inhibiting regulatory T cell response."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Life Sci (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.lfs.2021.119720"}], "href": "https://doi.org/10.1016/j.lfs.2021.119720"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34144056"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34144056"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Jing Xu, Rongtian Guo, Nasi Wen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "FBXO3 stabilizes USP4 and Twist1 to promote PI3K-mediated breast cancer metastasis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Biol (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pbio.3002446"}], "href": "https://doi.org/10.1371/journal.pbio.3002446"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38134227"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38134227"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Bo Liu, Xianli Zhang, Yuanyuan Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "USP4 regulates ribosome biogenesis and protein synthesis for hematopoietic stem cell regeneration and leukemia progression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Leukemia (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41375-024-02338-z"}], "href": "https://doi.org/10.1038/s41375-024-02338-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "39266638"}], "href": "https://pubmed.ncbi.nlm.nih.gov/39266638"}]}]}]}
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| Synonyms | HBII-52-23 |
| NCBI Gene ID | 100033800 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNORD115-23 has 161 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.
Click the + buttons to view associations for SNORD115-23 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD115-23 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD115-23 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD115-23 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SNORD115-23 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of SNORD115-23 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD115-23 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD115-23 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |