SNORD115-25 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, C/D box 115-25
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRetroviral envelope genes—collectively known as syncytins—have been co‐opted during mammalian evolution to enable the formation of specialized placental structures through cell–cell fusion. In both primates and rodents, independently acquired syncytin genes (syncytin‑1 and syncytin‑2 in humans; syncytin‑A and syncytin‑B in mice) drive the fusion of trophoblasts into multinucleated syncytiotrophoblast layers that form the key barrier at the maternofetal interface, facilitating nutrient exchange and overall placental morphogenesis (see."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond their fusogenic activity, some syncytins exert immunosuppressive functions that promote maternofetal tolerance. For instance, while human syncytin‑2 and murine syncytin‑B exhibit immunosuppressive properties, their counterparts maintain fusogenicity without directly dampening immune responses. In vivo knockout and inducible gene disruption studies further demonstrate that loss of specific syncytins leads to architectural placental defects, impaired vascular formation, and, in some cases, embryonic lethality—highlighting the nonredundant roles of these genes in placental development (see."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAt the mechanistic level, detailed cellular and biochemical assays have unraveled how syncytins mediate cell fusion. The identification of the receptor for mouse syncytin‑A—Ly6e—demonstrates that syncytin–receptor interactions are essential for initiating and regulating trophoblast fusion. Furthermore, studies employing trophoblast stem cell differentiation and fusion inhibition experiments have provided important insights into the structural elements governing fusogenicity and the potential compensatory mechanisms that safeguard placental function when syncytin expression is altered. These findings underscore the evolutionary convergence of retroviral gene capture in shaping the complex molecular machinery of placentation (see."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "9", "end_ref": "11"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Anne Dupressoir, Geoffroy Marceau, Cécile Vernochet, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Syncytin-A and syncytin-B, two fusogenic placenta-specific murine envelope genes of retroviral origin conserved in Muridae."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0406509102"}], "href": "https://doi.org/10.1073/pnas.0406509102"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15644441"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15644441"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Xiaoxue Peng, Ji'an Pan, Rui Gong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Functional characterization of syncytin-A, a newly murine endogenous virus envelope protein. Implication for its fusion mechanism."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M606353200"}], "href": "https://doi.org/10.1074/jbc.M606353200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17105734"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17105734"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Rui Gong, Liqin Huang, Jian Shi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Syncytin-A mediates the formation of syncytiotrophoblast involved in mouse placental development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Physiol Biochem (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1159/000107535"}], "href": "https://doi.org/10.1159/000107535"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17762178"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17762178"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "David G Simmons, David R C Natale, Valerie Begay, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Early patterning of the chorion leads to the trilaminar trophoblast cell structure in the placental labyrinth."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.020099"}], "href": "https://doi.org/10.1242/dev.020099"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18448564"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18448564"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Marianne Mangeney, Martial Renard, Géraldine Schlecht-Louf, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Placental syncytins: Genetic disjunction between the fusogenic and immunosuppressive activity of retroviral envelope proteins."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0707873105"}], "href": "https://doi.org/10.1073/pnas.0707873105"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18077339"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18077339"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Anne Dupressoir, Cécile Vernochet, Olivia Bawa, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Syncytin-A knockout mice demonstrate the critical role in placentation of a fusogenic, endogenous retrovirus-derived, envelope gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0902925106"}], "href": "https://doi.org/10.1073/pnas.0902925106"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19564597"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19564597"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Anne Dupressoir, Cécile Vernochet, Francis Harper, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A pair of co-opted retroviral envelope syncytin genes is required for formation of the two-layered murine placental syncytiotrophoblast."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1112304108"}], "href": "https://doi.org/10.1073/pnas.1112304108"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22032925"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22032925"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Christine Henke, Matthias Ruebner, Florian Faschingbauer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of murine placentogenesis by the retroviral genes Syncytin-A, Syncytin-B and Peg10."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Differentiation (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.diff.2013.02.002"}], "href": "https://doi.org/10.1016/j.diff.2013.02.002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23807393"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23807393"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Agathe Bacquin, Caroline Bireau, Maxime Tanguy, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A Cell Fusion-Based Screening Method Identifies Glycosylphosphatidylinositol-Anchored Protein Ly6e as the Receptor for Mouse Endogenous Retroviral Envelope Syncytin-A."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Virol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/JVI.00832-17"}], "href": "https://doi.org/10.1128/JVI.00832-17"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28679758"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28679758"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Shan Qiao, Fengchao Wang, Haibin Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Inducible knockout of Syncytin-A gene leads to an extensive placental vasculature deficiency, implications for preeclampsia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Chim Acta (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cca.2017.09.012"}], "href": "https://doi.org/10.1016/j.cca.2017.09.012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28935154"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28935154"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Ya-Nan Wang, Xue-Ling Chen, Ju Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Reduced syncytin-1 regulates trophoblast invasion and apoptosis in preeclampsia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Placenta (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.placenta.2024.07.311"}], "href": "https://doi.org/10.1016/j.placenta.2024.07.311"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "39121585"}], "href": "https://pubmed.ncbi.nlm.nih.gov/39121585"}]}]}]}
Synonyms HBII-52-25
NCBI Gene ID 100033801
API
Download Associations
Predicted Functions View SNORD115-25's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORD115-25's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORD115-25's ARCHS4 Predicted Functions.

Functional Associations

SNORD115-25 has 176 functional associations with biological entities spanning 4 categories (molecular profile, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.

Click the + buttons to view associations for SNORD115-25 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD115-25 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD115-25 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD115-25 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD115-25 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORD115-25 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of SNORD115-25 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SNORD115-25 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORD115-25 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD115-25 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of SNORD115-25 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD115-25 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.