| HGNC Family | Non-coding RNAs |
| Name | small nucleolar RNA, C/D box 115-33 |
| Description | Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe collection of studies primarily examines the role of the pink‐eyed dilution (p) gene (OCA2) in melanocyte biology, emphasizing its central functions in melanin synthesis, tyrosinase processing, and proper melanosome maturation and trafficking. For example, defects in the p gene result in altered intracellular localization and processing of tyrosinase, leading to both reduced eumelanin production and abnormal secretion of enzymatically active tyrosinase, with consequential hypopigmentation in affected melanocytes."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional investigations have revealed that p gene function extends into the regulation of intracellular detoxification processes, including effects on glutathione metabolism, as well as influencing cellular proliferation, differentiation, and programmed cell death in melanocytes. In these studies, p gene mutations not only perturb melanosome number and maturation but also enhance cellular sensitivity to toxic compounds by interfering with normal glutathione compartmentalization and disrupting apoptotic pathways."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "6", "end_ref": "10"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nA further facet explored in these reports is the interplay between the p gene and genetic pathways linked to neurodevelopmental disorders, where alterations in gene expression in the 15q11–13 region (a locus that also harbors small nucleolar RNAs such as those in the SNORD115 family) influence not only pigmentation but also aspects of neural function. Although none of the provided abstracts expressly detail the function of SNORD115-33, its genomic location within the imprinted region associated with Prader–Willi and Angelman syndromes in humans suggests that, by analogy with its family members known to modulate alternative splicing and gene regulation, SNORD115-33 might be hypothesized to affect pathways intersecting with melanocyte function. However, the current body of literature here is dedicated predominantly to p gene (OCA2) function and does not extend to a direct evaluation of SNORD115-33, leaving its potential role in pigmentation or related cellular processes open for future investigation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "11", "end_ref": "14"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Tomohisa Hirobe, Yoko Kawa, Masako Mizoguchi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Effects of genic substitution at the pink-eyed dilution locus on the proliferation and differentiation of mouse epidermal melanocytes in vivo and in vitro."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Zool (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jez.10051"}], "href": "https://doi.org/10.1002/jez.10051"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11857469"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11857469"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Kazutomo Toyofuku, Julio C Valencia, Tsuneto Kushimoto, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The etiology of oculocutaneous albinism (OCA) type II: the pink protein modulates the processing and transport of tyrosinase."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pigment Cell Res (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1034/j.1600-0749.2002.02007.x"}], "href": "https://doi.org/10.1034/j.1600-0749.2002.02007.x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12028586"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12028586"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Kun Chen, Prashiela Manga, Seth J Orlow "}, {"type": "b", "children": [{"type": "t", "text": "Pink-eyed dilution protein controls the processing of tyrosinase."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.02-02-0022"}], "href": "https://doi.org/10.1091/mbc.02-02-0022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12058062"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12058062"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Tomohisa Hirobe, Kazumasa Wakamatsu, Shosuke Ito, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Stimulation of the proliferation and differentiation of mouse pink-eyed dilution epidermal melanocytes by excess tyrosine in serum-free primary culture."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.10085"}], "href": "https://doi.org/10.1002/jcp.10085"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12064459"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12064459"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Liliana Staleva, Prashiela Manga, Seth J Orlow "}, {"type": "b", "children": [{"type": "t", "text": "Pink-eyed dilution protein modulates arsenic sensitivity and intracellular glutathione metabolism."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.e02-05-0282"}], "href": "https://doi.org/10.1091/mbc.e02-05-0282"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12475946"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12475946"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Tomohisa Hirobe, Shosuke Ito, Kazumasa Wakamatsu "}, {"type": "b", "children": [{"type": "t", "text": "The mouse pink-eyed dilution allele of the P-gene greatly inhibits eumelanin but not pheomelanin synthesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pigment Cell Melanoma Res (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/j.1755-148X.2010.00783.x"}], "href": "https://doi.org/10.1111/j.1755-148X.2010.00783.x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21232027"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21232027"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Diego J Hoyle, Imilce A Rodriguez-Fernandez, Esteban C Dell'angelica "}, {"type": "b", "children": [{"type": "t", "text": "Functional interactions between OCA2 and the protein complexes BLOC-1, BLOC-2, and AP-3 inferred from epistatic analyses of mouse coat pigmentation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pigment Cell Melanoma Res (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/j.1755-148X.2010.00815.x"}], "href": "https://doi.org/10.1111/j.1755-148X.2010.00815.x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21392365"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21392365"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Tomohisa Hirobe, Emi Terunuma "}, {"type": "b", "children": [{"type": "t", "text": "Reduced proliferative and differentiative activity of mouse pink-eyed dilution melanoblasts is related to apoptosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Zoolog Sci (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2108/zsj.29.725"}], "href": "https://doi.org/10.2108/zsj.29.725"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23106556"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23106556"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Tsing Cheng, Seth J Orlow, Prashiela Manga "}, {"type": "b", "children": [{"type": "t", "text": "Loss of Oca2 disrupts the unfolded protein response and increases resistance to endoplasmic reticulum stress in melanocytes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pigment Cell Melanoma Res (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/pcmr.12158"}], "href": "https://doi.org/10.1111/pcmr.12158"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23962237"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23962237"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Fanny Morice-Picard, Eulalie Lasseaux, Dorothée Cailley, et al. "}, {"type": "b", "children": [{"type": "t", "text": "High-resolution array-CGH in patients with oculocutaneous albinism identifies new deletions of the TYR, OCA2, and SLC45A2 genes and a complex rearrangement of the OCA2 gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pigment Cell Melanoma Res (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/pcmr.12173"}], "href": "https://doi.org/10.1111/pcmr.12173"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24118800"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24118800"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Sangjoo Park, V K Morya, Dong Hoang Nguyen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Unrevealing the role of P-protein on melanosome biology and structure, using siRNA-mediated down regulation of OCA2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biochem (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11010-015-2337-y"}], "href": "https://doi.org/10.1007/s11010-015-2337-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25656818"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25656818"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Haruka Shoji, Yukiko Kiniwa, Ryuhei Okuyama, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A nonsense nucleotide substitution in the oculocutaneous albinism II gene underlies the original pink-eyed dilution allele (Oca2(p)) in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Anim (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1538/expanim.14-0075"}], "href": "https://doi.org/10.1538/expanim.14-0075"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25736709"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25736709"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Yu Chen, Li Pan, Zhongyuan Su, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The transcription factor TBX2 regulates melanogenesis in melanocytes by repressing Oca2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biochem (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11010-016-2680-7"}], "href": "https://doi.org/10.1007/s11010-016-2680-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26971330"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26971330"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Ryan J Delahanty, Yanfeng Zhang, Terry Jo Bichell, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Beyond Epilepsy and Autism: Disruption of GABRB3 Causes Ocular Hypopigmentation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2016.11.067"}], "href": "https://doi.org/10.1016/j.celrep.2016.11.067"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28009282"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28009282"}]}]}]}
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| Synonyms | HBII-52-33 |
| NCBI Gene ID | 100033807 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNORD115-33 has 181 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.
Click the + buttons to view associations for SNORD115-33 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD115-33 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD115-33 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD115-33 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD115-33 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SNORD115-33 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of SNORD115-33 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD115-33 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of SNORD115-33 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD115-33 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |