| HGNC Family | Non-coding RNAs |
| Name | small nucleolar RNA, C/D box 115-39 |
| Description | Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nATAD3A is emerging as a central regulator of mitochondrial architecture and biogenesis during early development and cellular homeostasis. Loss‐of‐function studies in mice revealed that ATAD3A is critical for proper trophoblast differentiation and mitochondrial biogenesis, as its absence early after implantation leads to embryonic lethality."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Complementary analyses have established that ATAD3 is expressed in multiple isoforms in both rodent and human tissues, suggesting finely tuned and context‐dependent roles."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Moreover, ATAD3A facilitates mitochondria–endoplasmic reticulum (ER) contact site formation which is important for efficient steroidogenesis in Leydig cells"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ", and it has been shown to interact with key mediators of mitochondrial nucleoid maintenance and DNA repair such as Fancd2."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn differentiated tissues, perturbation of ATAD3A function leads to severe mitochondrial dysfunction that critically impacts cell fate and survival. Targeted deletion of Atad3a in hematopoietic cells causes hyperactivation of mitophagy and skewed stem cell differentiation"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": ", while skeletal muscle–specific Atad3 knockout results in drastic alterations in mitochondrial cristae structure and function."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " In models of neurodegenerative disorders, deacetylation-driven dimerization of ATAD3A crucially facilitates Drp1-mediated mitochondrial fragmentation and subsequent mtDNA destabilization, linking it to Huntington's disease pathogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " In addition, neuronal-specific deletion of Atad3 results in profound encephalopathy associated with early disruptions in inner mitochondrial membrane organization"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": ", and ATAD3A oligomerization has been implicated in perturbing cholesterol metabolism and APP processing in Alzheimer's disease."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nATAD3A also coordinates interorganelle communication in a tissue-specific manner to preserve cellular bioenergetics. Its role in maintaining ER–mitochondria contacts is critical in cardiac tissue, where ATAD3A prevents mitochondrial calcium overload and supports mitochondrial function during stress"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": ";"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": ";."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": " In addition, modulation of ATAD3 levels directly influences mitochondrial biogenesis during adipogenesis, with overexpression accelerating the differentiation and lipogenic process in adipocyte cell models."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Tobias Goller, Ursula K Seibold, Elisabeth Kremmer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Atad3 function is essential for early post-implantation development in the mouse."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0054799"}], "href": "https://doi.org/10.1371/journal.pone.0054799"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23372768"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23372768"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Shuijie Li, Fredéric Lamarche, Romain Charton, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression analysis of ATAD3 isoforms in rodent and human cell lines and tissues."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.gene.2013.10.062"}], "href": "https://doi.org/10.1016/j.gene.2013.10.062"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24239551"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24239551"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Leeyah Issop, Jinjiang Fan, Sunghoon Lee, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mitochondria-associated membrane formation in hormone-stimulated Leydig cell steroidogenesis: role of ATAD3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Endocrinology (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/en.2014-1503"}], "href": "https://doi.org/10.1210/en.2014-1503"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25375035"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25375035"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Tingting Zhang, Wei Du, Andrew F Wilson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Fancd2 in vivo interaction network reveals a non-canonical role in mitochondrial function."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep45626"}], "href": "https://doi.org/10.1038/srep45626"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28378742"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28378742"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Guoxiang Jin, Chuan Xu, Xian Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Atad3a suppresses Pink1-dependent mitophagy to maintain homeostasis of hematopoietic progenitor cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Immunol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41590-017-0002-1"}], "href": "https://doi.org/10.1038/s41590-017-0002-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29242539"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29242539"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Susana Peralta, Steffi Goffart, Sion L Williams, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ATAD3 controls mitochondrial cristae structure in mouse muscle, influencing mtDNA replication and cholesterol levels."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Sci (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/jcs.217075"}], "href": "https://doi.org/10.1242/jcs.217075"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29898916"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29898916"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Yuanyuan Zhao, Xiaoyan Sun, Di Hu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ATAD3A oligomerization causes neurodegeneration by coupling mitochondrial fragmentation and bioenergetics defects."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-019-09291-x"}], "href": "https://doi.org/10.1038/s41467-019-09291-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30914652"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30914652"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Tania Arguello, Susana Peralta, Hana Antonicka, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ATAD3A has a scaffolding role regulating mitochondria inner membrane structure and protein assembly."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2021.110139"}], "href": "https://doi.org/10.1016/j.celrep.2021.110139"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34936866"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34936866"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Yuanyuan Zhao, Di Hu, Rihua Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ATAD3A oligomerization promotes neuropathology and cognitive deficits in Alzheimer's disease models."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-022-28769-9"}], "href": "https://doi.org/10.1038/s41467-022-28769-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35236834"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35236834"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Hyeri Lee, Dae-Won Kim "}, {"type": "b", "children": [{"type": "t", "text": "Deletion of ATAD3A inhibits osteogenesis by impairing mitochondria structure and function in pre-osteoblast."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Dyn (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/dvdy.528"}], "href": "https://doi.org/10.1002/dvdy.528"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36000457"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36000457"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Seiji Watanabe, Mai Horiuchi, Yuri Murata, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Sigma-1 receptor maintains ATAD3A as a monomer to inhibit mitochondrial fragmentation at the mitochondria-associated membrane in amyotrophic lateral sclerosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurobiol Dis (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.nbd.2023.106031"}], "href": "https://doi.org/10.1016/j.nbd.2023.106031"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36736924"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36736924"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Zeyu Li, Ou Hu, Suowen Xu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The SIRT3-ATAD3A axis regulates MAM dynamics and mitochondrial calcium homeostasis in cardiac hypertrophy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Biol Sci (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7150/ijbs.89253"}], "href": "https://doi.org/10.7150/ijbs.89253"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38250153"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38250153"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Shuijie Li, Rui Xu, Yao Yao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ATAD3 is a limiting factor in mitochondrial biogenesis and adipogenesis of white adipocyte-like 3T3-L1 cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Biol Int (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/cbin.12206"}], "href": "https://doi.org/10.1002/cbin.12206"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38923254"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38923254"}]}]}]}
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| Synonyms | HBII-52-39 |
| NCBI Gene ID | 100033813 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNORD115-39 has 166 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.
Click the + buttons to view associations for SNORD115-39 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD115-39 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD115-39 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD115-39 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD115-39 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SNORD115-39 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of SNORD115-39 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD115-39 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD115-39 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |