SNORD115-44 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, C/D box 115-44
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nWhile none of the provided abstracts directly address SNORD115‐44, they offer detailed insights into the functions of the BRE gene and its associated proteins, which collectively play pivotal roles in modulating cellular stress responses. Notably, BRE (also known as BRCC45) has been shown to influence cell survival and apoptosis through interactions with key regulators such as p53, NF‑κB, and XIAP. In particular, BRE knockdown or overexpression leads to marked changes in proteins that control proliferation and survival, thereby affecting tumor growth and stress‐induced cell death."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional studies demonstrate that BRE is critically involved in the maintenance of genomic integrity. BRE‐deficient cells exhibit impaired DNA repair, as evidenced by prolonged γ‑H2AX foci and disrupted recruitment of the BRCA1‑A complex during homologous recombination. Moreover, BRE levels impact cellular senescence and modulate osteogenic differentiation; reduced BRE expression correlates with deteriorated osteoblast function and altered bone remodeling through an upregulation of p53 signaling pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurthermore, research on Babam2—a protein within the same BRISC/BRCA1‑A complex network—reveals its role as a negative regulator of osteoclast formation and bone resorption. Babam2 appears to act through interactions with transcriptional regulators like Hey1, ultimately attenuating the activity of Nfatc1 and mitigating osteoclast‐mediated bone loss. This finding underscores a broader regulatory network in which BRE and its associated factors contribute not only to stress and apoptotic responses but also to bone homeostasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, although the function of SNORD115‐44 is not delineated in these studies, the collective data highlight critical roles for BRE and related proteins in controlling cellular stress responses, DNA repair, apoptosis, and bone remodeling. Future research may reveal whether SNORD115‐44 intersects with these regulatory pathways, enhancing our understanding of its potential biological significance.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Arthur Kar Keung Ching, Qing Li, Pak Leong Lim, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression of a conserved mouse stress-modulating gene, Bre: comparison with the human ortholog."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "DNA Cell Biol (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1089/10445490360708900"}], "href": "https://doi.org/10.1089/10445490360708900"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14565866"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14565866"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Mei Kuen Tang, Chun Mei Wang, Sze Wan Shan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comparative proteomic analysis reveals a function of the novel death receptor-associated protein BRE in the regulation of prohibitin and p53 expression and proliferation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proteomics (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/pmic.200500603"}], "href": "https://doi.org/10.1002/pmic.200500603"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16518872"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16518872"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yiu-Loon Chui, Chun-Hung Ma, Wei Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Anti-apoptotic protein BRE/BRCC45 attenuates apoptosis through maintaining the expression of caspase inhibitor XIAP in mouse Lewis lung carcinoma D122 cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Apoptosis (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10495-013-0963-y"}], "href": "https://doi.org/10.1007/s10495-013-0963-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24395041"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24395041"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Wenting Shi, Mei Kuen Tang, Yao Yao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "BRE plays an essential role in preventing replicative and DNA damage-induced premature senescence."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep23506"}], "href": "https://doi.org/10.1038/srep23506"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27001068"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27001068"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Fujun Jin, Yiliang Wang, Xiaojing Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Bre Enhances Osteoblastic Differentiation by Promoting the Mdm2-Mediated Degradation of p53."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Stem Cells (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/stem.2620"}], "href": "https://doi.org/10.1002/stem.2620"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28436570"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28436570"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Fujun Jin, Yexuan Zhu, Meijing Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Babam2 negatively regulates osteoclastogenesis by interacting with Hey1 to inhibit Nfatc1 transcription."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Biol Sci (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7150/ijbs.72487"}], "href": "https://doi.org/10.7150/ijbs.72487"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35864959"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35864959"}]}]}]}
Synonyms HBII-52-44
NCBI Gene ID 100033818
API
Download Associations
Predicted Functions View SNORD115-44's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORD115-44's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORD115-44's ARCHS4 Predicted Functions.

Functional Associations

SNORD115-44 has 177 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.

Click the + buttons to view associations for SNORD115-44 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD115-44 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD115-44 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SNORD115-44 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD115-44 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD115-44 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD115-44 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORD115-44 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SNORD115-44 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of SNORD115-44 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORD115-44 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD115-44 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of SNORD115-44 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD115-44 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.