SNORD117 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, C/D box 117
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
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Despite the extensive characterization of protein–protein interactions, adhesion molecules, and noncoding regulators in these studies"}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "21", "end_ref": "39"}]}, {"type": "t", "text": ", there is no mention or experimental evaluation of SNORD117. As a member of the C/D box small nucleolar RNAs typically known to guide 2′-O-methylation modifications of rRNAs and other RNAs, any role for SNORD117 in these contexts remains to be elucidated. In summary, while these studies deepen our understanding of cellular adhesion, differentiation, and signaling networks, dedicated research is needed to determine whether SNORD117 participates in ribonucleoprotein complex assembly, RNA modification, or other regulatory pathways in either normal physiology or disease states.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Eva Schmelzer, Lola M Reid "}, {"type": "b", "children": [{"type": "t", "text": "EpCAM expression in normal, non-pathological tissues."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Biosci (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2741/2911"}], "href": "https://doi.org/10.2741/2911"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17981779"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17981779"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Monika Trzpis, Eliane R Popa, Pamela M J McLaughlin, et al. 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Synonyms U83
NCBI Gene ID 692233
API
Download Associations
Predicted Functions View SNORD117's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORD117's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORD117's ARCHS4 Predicted Functions.

Functional Associations

SNORD117 has 363 functional associations with biological entities spanning 4 categories (molecular profile, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 14 datasets.

Click the + buttons to view associations for SNORD117 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD117 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD117 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD117 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD117 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORD117 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SNORD117 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SNORD117 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of SNORD117 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SNORD117 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORD117 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD117 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of SNORD117 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SNORD117 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD117 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.