SNORD118 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, C/D box 118
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nSNORD118 is the gene that encodes the U8 small nucleolar RNA (snoRNA), a specialized box C/D RNA integral to ribosome biogenesis. Unlike most snoRNAs that guide 2′-O-methylation, U8 is atypical in that it directs precise cleavage events during the maturation of precursor ribosomal RNAs, ultimately producing essential components of the large ribosomal subunit (5.8S and 28S rRNAs). This unique function ensures proper ribosome assembly and cellular protein synthesis, which is fundamental for cell viability and overall organismal homeostasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMutations in SNORD118 have been robustly linked to the neurovascular disorder leukoencephalopathy with calcifications and cysts (LCC). Biallelic variants disrupt U8 expression, its processing, and its interaction with proteins, thereby impairing ribosome biogenesis and, ultimately, cerebral vascular homeostasis. Detailed molecular studies indicate that while some variants cause severely deleterious effects, many patients possess a mix of severe and milder mutations—often affecting the 3′-end processing of precursor-U8—that together determine the disease’s clinical spectrum. This genetic etiology clearly distinguishes LCC from phenotypically similar conditions such as Coats plus syndrome, where mutations in other genes like CTC1 are observed."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nCollectively, these findings underscore the critical role of SNORD118 and its product, the U8 snoRNA, in ensuring efficient ribosome biogenesis—a function that is unexpectedly tied to the maintenance of neurovascular integrity. The pronounced variability in disease onset and severity among patients, including marked intrafamilial differences, highlights the complex genotype–phenotype correlations underlying LCC. This emerging understanding of SNORD118’s function not only provides insight into the mechanisms of ribosome maturation but also reveals how subtle alterations in a non-protein-coding RNA can precipitate devastating cerebral microangiopathies."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Emma M Jenkinson, Mathieu P Rodero, Paul R Kasher, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mutations in SNORD118 cause the cerebral microangiopathy leukoencephalopathy with calcifications and cysts."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ng.3661"}], "href": "https://doi.org/10.1038/ng.3661"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27571260"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27571260"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Emily J McFadden, Susan J Baserga "}, {"type": "b", "children": [{"type": "t", "text": "U8 variants on the brain: a small nucleolar RNA and human disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA Biol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15476286.2022.2048563"}], "href": "https://doi.org/10.1080/15476286.2022.2048563"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35389826"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35389826"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Kazuhiro Iwama, Takeshi Mizuguchi, Jun-Ichi Takanashi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of novel SNORD118 mutations in seven patients with leukoencephalopathy with brain calcifications and cysts."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Genet (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/cge.12991"}], "href": "https://doi.org/10.1111/cge.12991"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28177126"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28177126"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "O Osman, P Labrune, P Reiner, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Leukoencephalopathy with calcifications and cysts (LCC): 5 cases and literature review."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Rev Neurol (Paris) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neurol.2019.06.006"}], "href": "https://doi.org/10.1016/j.neurol.2019.06.006"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31521395"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31521395"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Yanick J Crow, Heather Marshall, Gillian I Rice, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Leukoencephalopathy with calcifications and cysts: Genetic and phenotypic spectrum."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Med Genet A (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ajmg.a.61907"}], "href": "https://doi.org/10.1002/ajmg.a.61907"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33029936"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33029936"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Patrick W Cullinane, Sally Ann Lynch, Michael Marnane "}, {"type": "b", "children": [{"type": "t", "text": "Phenotypic Variability in Leukoencephalopathy with Brain Calcifications and Cysts: Case Report of Siblings from an Irish Traveller Family with a Homozygous SNORD118 Mutation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Neurosci (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12031-020-01550-7"}], "href": "https://doi.org/10.1007/s12031-020-01550-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32361877"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32361877"}]}]}]}
Synonyms U8, LCC
NCBI Gene ID 727676
API
Download Associations
Predicted Functions View SNORD118's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORD118's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORD118's ARCHS4 Predicted Functions.

Functional Associations

SNORD118 has 725 functional associations with biological entities spanning 2 categories (functional term, phrase or reference, cell line, cell type or tissue) extracted from 11 datasets.

Click the + buttons to view associations for SNORD118 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of SNORD118 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores cellular components containing SNORD118 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores cellular components co-occuring with SNORD118 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing SNORD118 from the GeneSigDB Published Gene Signatures dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SNORD118 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SNORD118 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD118 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of SNORD118 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores tissues with high expression of SNORD118 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores tissues with high expression of SNORD118 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores tissues co-occuring with SNORD118 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset.