| HGNC Family | Non-coding RNAs |
| Name | small nucleolar RNA, C/D box 12 |
| Description | Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nNote that the provided abstracts do not mention SNORD12; rather, they describe the characteristics and roles of the ARL4 protein. In the first study"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ", ARL4 is identified as a 22‐kDa GTP-binding protein that appears during the later stages of testis development. Its expression is confined to pre- and postmeiotic germ cells, and disruption of the Arl4 gene leads to a moderate reduction in testis weight and sperm count, suggesting that ARL4 plays a supportive role in ensuring the timely progression of germ cell maturation, particularly during meiotic phases.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nThe second study"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "places ARL4 within a broader developmental context. Here, ARL4 is among a diverse set of genes identified in the early somite, specifically expressed in the dermomyotome region. Although this work focused on downstream targets of WNT signaling and compared gene profiles in presomitic mesoderm versus newly formed somites, ARL4 was noted as differentially regulated and, unlike some other genes such as Troy, did not emerge as a direct canonical WNT target.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nCollectively, these studies indicate that ARL4 functions in distinct developmental processes. In reproductive biology, ARL4 appears to facilitate germ cell development during spermatogenesis, with its absence leading to a delayed or reduced maturation of these cells. In embryonic development, its expression within the somite-derived dermomyotome suggests an ancillary role in tissue patterning and differentiation. Although the abstracts do not address SNORD12, the highlighted functions of ARL4 underscore its importance in both gonadal and somite development."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "A Schürmann, S Koling, S Jacobs, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Reduced sperm count and normal fertility in male mice with targeted disruption of the ADP-ribosylation factor-like 4 (Arl4) gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.22.8.2761-2768.2002"}], "href": "https://doi.org/10.1128/MCB.22.8.2761-2768.2002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11909968"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11909968"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Laura Buttitta, Tetsuya S Tanaka, Alice E Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Microarray analysis of somitogenesis reveals novel targets of different WNT signaling pathways in the somitic mesoderm."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0012-1606(03)00116-7"}], "href": "https://doi.org/10.1016/s0012-1606(03"}, {"type": "t", "text": "00116-7) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12781685"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12781685"}]}]}]}
|
| Synonyms | MIRN1259, HBII-99, MIR1259 |
| NCBI Gene ID | 692057 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNORD12 has 1,308 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.
Click the + buttons to view associations for SNORD12 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD12 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD12 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of SNORD12 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD12 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD12 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD12 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SNORD12 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| ESCAPE Omics Signatures of Genes and Proteins for Stem Cells | PubMedIDs of publications reporting gene signatures containing SNORD12 from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of SNORD12 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of SNORD12 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of SNORD12 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD12 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of SNORD12 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of SNORD12 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SNORD12 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD12 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |