SNORD18B Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, C/D box 18B
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe mitochondrial phosphatase PTPMT1 has emerged as a key regulator of cellular energy homeostasis and stem cell function. Studies have demonstrated that loss of PTPMT1 in hematopoietic stem cells leads to dramatic alterations in mitochondrial metabolism, marked changes in the cell cycle, and an unexpected, roughly 40‐fold increase in the stem cell pool accompanied by impaired differentiation. Global deletion of PTPMT1 results in embryonic lethality associated with disrupted cardiolipin biosynthesis—linked to an accumulation of its precursor, phosphatidylglycerolphosphate—as well as deformed mitochondrial morphology. This establishes PTPMT1 as essential for coordinating metabolic signals with proper stem cell maintenance and differentiation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurther research has revealed that PTPMT1 is indispensable for embryonic stem cell differentiation and neural development. In conditional knockout models, depletion of PTPMT1 in ES cells leads to reduced proliferation, a significant delay in the cell cycle, and a nearly complete block in differentiation—phenomena linked to the upregulation of cyclin-dependent kinase inhibitors. Loss of PTPMT1 in neural precursor populations, for instance, compromises Bergmann glia generation and impairs neural stem cell self-renewal via bioenergetic stress, activating an AMPK-dependent checkpoint. These findings highlight the enzyme’s specific importance in stem and progenitor cell populations, as its ablation in differentiated cells has a much less pronounced impact."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its role in stem cell biology, PTPMT1 is critical for maintaining metabolic flexibility in energy-demanding tissues. Deletion of PTPMT1 shifts mitochondrial fuel utilization away from pyruvate oxidation toward enhanced fatty acid metabolism. Although this substrate switch may initially compensate for reduced carbohydrate oxidation, prolonged reliance on lipid metabolism ultimately induces oxidative stress and mitochondrial damage, leading to muscular atrophy and heart failure. These observations underscore the need for balanced utilization of carbohydrates and lipids in preserving the integrity of both skeletal muscle and cardiac tissues."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Wen-Mei Yu, Xia Liu, Jinhua Shen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Metabolic regulation by the mitochondrial phosphatase PTPMT1 is required for hematopoietic stem cell differentiation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Stem Cell (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.stem.2012.11.022"}], "href": "https://doi.org/10.1016/j.stem.2012.11.022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23290137"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23290137"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Ji Zhang, Ziqiang Guan, Anne N Murphy, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mitochondrial phosphatase PTPMT1 is essential for cardiolipin biosynthesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Metab (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cmet.2011.04.007"}], "href": "https://doi.org/10.1016/j.cmet.2011.04.007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21641550"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21641550"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "David J Pagliarini, Sandra E Wiley, Michelle E Kimple, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Involvement of a mitochondrial phosphatase in the regulation of ATP production and insulin secretion in pancreatic beta cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molcel.2005.06.008"}], "href": "https://doi.org/10.1016/j.molcel.2005.06.008"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16039589"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16039589"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Jinhua Shen, Xia Liu, Wen-Mei Yu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A critical role of mitochondrial phosphatase Ptpmt1 in embryogenesis reveals a mitochondrial metabolic stress-induced differentiation checkpoint in embryonic stem cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.05629-11"}], "href": "https://doi.org/10.1128/MCB.05629-11"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21986498"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21986498"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Hong Zheng, Wen-Mei Yu, Jinhua Shen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mitochondrial oxidation of the carbohydrate fuel is required for neural precursor/stem cell function and postnatal cerebellar development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Adv (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/sciadv.aat2681"}], "href": "https://doi.org/10.1126/sciadv.aat2681"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30338292"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30338292"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Hong Zheng, Qianjin Li, Shanhu Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of Ptpmt1 limits mitochondrial utilization of carbohydrates and leads to muscle atrophy and heart failure in tissue-specific knockout mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Elife (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7554/eLife.86944"}], "href": "https://doi.org/10.7554/eLife.86944"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37672386"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37672386"}]}]}]}
Synonyms U18B
NCBI Gene ID 595099
API
Download Associations
Predicted Functions View SNORD18B's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORD18B's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORD18B's ARCHS4 Predicted Functions.

Functional Associations

SNORD18B has 654 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 12 datasets.

Click the + buttons to view associations for SNORD18B from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD18B gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD18B gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SNORD18B gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD18B gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD18B gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD18B gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORD18B gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORD18B gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD18B gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of SNORD18B gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD18B gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
WikiPathways Pathways 2014 pathways involving SNORD18B protein from the Wikipathways Pathways 2014 dataset.