| HGNC Family | Non-coding RNAs |
| Name | small nucleolar RNA, C/D box 27 |
| Description | Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nSNORD27 is a multifunctional C/D box small nucleolar RNA that, in its canonical role, guides the 2′-O-methylation of ribosomal RNA (specifically methylating A27 in 18S rRNA), thereby contributing to the proper modification and maturation of rRNA. However, recent work has revealed an additional, noncanonical function whereby a fraction of SNORD27 exists in a soluble nuclear complex lacking its typical binding partner fibrillarin. In this complex, SNORD27 directly interacts with pre-mRNA targets—most notably that of the transcription factor E2F7—regulating alternative splicing by competing with U1 small nuclear ribonucleoprotein (snRNP). Moreover, knockdown experiments indicate that suppression of SNORD27 leads to activation of previously silent exons in several other genes through extensive base complementarity across its entire sequence, suggesting that SNORD27 plays an expanded role in splicing regulation beyond its traditional rRNA processing duties."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn a clinical context, overexpression of SNORD27, along with several other SNORD family members, has been correlated with a shorter time to progression in smoldering myeloma. This association underscores the potential prognostic and possibly pathogenic significance of SNORD27 expression levels in hematologic malignancies, thereby linking its noncanonical regulatory roles to disease outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Marina Falaleeva, Amadis Pages, Zaneta Matuszek, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1519292113"}], "href": "https://doi.org/10.1073/pnas.1519292113"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26957605"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26957605"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Lucía López-Corral, María Victoria Mateos, Luis A Corchete, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genomic analysis of high-risk smoldering multiple myeloma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Haematologica (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3324/haematol.2011.060780"}], "href": "https://doi.org/10.3324/haematol.2011.060780"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22331267"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22331267"}]}]}]}
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| Synonyms | RNU27, U27 |
| NCBI Gene ID | 9301 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNORD27 has 1,431 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.
Click the + buttons to view associations for SNORD27 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD27 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD27 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of SNORD27 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD27 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD27 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD27 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SNORD27 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of SNORD27 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD27 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of SNORD27 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of SNORD27 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SNORD27 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD27 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |