| HGNC Family | Non-coding RNAs |
| Name | small nucleolar RNA, C/D box 36C |
| Description | Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough SNORD36C is classically defined as a small nucleolar RNA involved in the chemical modification of ribosomal RNA, none of the provided abstracts describe its function. Instead, these studies focus on the diverse roles of intersectin proteins (particularly ITSN1 and its isoforms) as multidomain scaffolds that orchestrate endocytic trafficking and associated signaling pathways. In neuronal and other cell types, ITSN1 has been shown to regulate key steps of clathrin‐mediated endocytosis, vesicle recycling, and exocytosis, thereby influencing neurotransmitter release, intracellular receptor trafficking, and even neuroprotective as well as synaptic plasticity mechanisms."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional studies reveal that intersectin proteins also act as platforms that integrate signaling cascades with membrane trafficking. Through direct interactions with proteins such as dynamin, Cdc42 regulators, and class II phosphoinositide 3'-kinase, ITSN1 not only modulates vesicle dynamics but also governs cellular survival pathways, synaptic vesicle replenishment, and even the formation of interhemispheric neuronal connections. Alternative splicing and differential intra‐domain interactions further diversify ITSN1’s roles in synaptic function and neuronal migration, with implications for neurological disorders including epilepsy and Alzheimer’s disease."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "7"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIntersectin proteins also contribute to receptor regulation and intracellular signal modulation. For example, ITSN1 enhances the ubiquitylation and lysosomal degradation of receptor tyrosine kinases such as EGFR by modulating the interactions between the E3 ubiquitin ligase Cbl and its inhibitors (e.g. Sprouty2), a mechanism further fine‐tuned by the recruitment of the Shp2 phosphatase. Moreover, regulation by microRNAs—exemplified by miR-194 targeting ITSN1—demonstrates how intersectin levels can indirectly affect membrane channel activity and cellular excitability in non-neuronal tissues."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "10"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFinally, the broad physiological importance of intersectin proteins is underscored by studies linking ITSN1 dysfunction to diverse pathological states, ranging from pulmonary arterial hypertension and vascular remodeling to altered heart and brain proteomes associated with neurodegeneration and cognitive deficits. Complementary investigations into the autoregulatory mechanisms of ITSN1 splice variants further illuminate how subtle differences in domain structure govern binding to synaptic partners and dictate cell-specific functional outcomes."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "11", "end_ref": "17"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yong Yu, Po-Yin Chu, David N Bowser, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mice deficient for the chromosome 21 ortholog Itsn1 exhibit vesicle-trafficking abnormalities."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddn224"}], "href": "https://doi.org/10.1093/hmg/ddn224"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18676989"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18676989"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Margaret Das, Erica Scappini, Negin P Martin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of neuron survival through an intersectin-phosphoinositide 3'-kinase C2beta-AKT pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.01369-07"}], "href": "https://doi.org/10.1128/MCB.01369-07"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17875942"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17875942"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Pia Rossi, Bruno Sterlini, Enrico Castroflorio, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A Novel Topology of Proline-rich Transmembrane Protein 2 (PRRT2): HINTS FOR AN INTRACELLULAR FUNCTION AT THE SYNAPSE."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M115.683888"}], "href": "https://doi.org/10.1074/jbc.M115.683888"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26797119"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26797119"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Jennifer L Zamanian, Regis B Kelly "}, {"type": "b", "children": [{"type": "t", "text": "Intersectin 1L guanine nucleotide exchange activity is regulated by adjacent src homology 3 domains that are also involved in endocytosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.e02-08-0494"}], "href": "https://doi.org/10.1091/mbc.e02-08-0494"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12686614"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12686614"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Jian-Bin Wang, Wen Jin Wu, Richard A Cerione "}, {"type": "b", "children": [{"type": "t", "text": "Cdc42 and Ras cooperate to mediate cellular transformation by intersectin-L."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M414375200"}], "href": "https://doi.org/10.1074/jbc.M414375200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15824104"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15824104"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Takeshi Sakaba, Natalia L Kononenko, Jelena Bacetic, et al. 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|
| Synonyms | RNU36C, U36C |
| NCBI Gene ID | 26813 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNORD36C has 1,097 functional associations with biological entities spanning 6 categories (molecular profile, organism, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.
Click the + buttons to view associations for SNORD36C from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD36C gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD36C gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of SNORD36C gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD36C gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD36C gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SNORD36C gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SNORD36C gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of SNORD36C gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of SNORD36C gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD36C gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of SNORD36C gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of SNORD36C gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain SNORD36C protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SNORD36C gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD36C gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |