SNORD43 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, C/D box 43
Description Intronic regions of ribosomal protein genes can harbor noncoding small nucleolar RNAs (snoRNAs), like SNORD43, which are generated during pre-mRNA processing. snoRNAs form part of the small nucleolar ribonucleoprotein particles (snoRNPs) involved in pre-rRNA processing and modification. snoRNAs of the box C/D class, like SNORD43, function in 2-prime-O-ribose methylation of rRNAs (Duga et al., 2000 [PubMed 10684968]).[supplied by OMIM, Mar 2008]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough several of the provided abstracts delve into the regulation of hepatic cytochrome P450 enzymes and xenobiotic metabolism, none of them directly address the function of SNORD43. SNORD43 is a small nucleolar RNA (snoRNA) that traditionally is involved in the chemical modification (2′-O-methylation) and processing of ribosomal RNA, critical for proper ribosome biogenesis and function. In contrast, the studies cited here focus on transcriptional regulation and enzyme induction events mediated by nuclear receptors—such as constitutive androstane receptor (CAR), pregnane X receptor (PXR), and peroxisome proliferator-activated receptor alpha (PPARα)—which are central to drug metabolism and detoxification processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther work discussed in these abstracts highlights how xenobiotic activators and metabolic stressors modulate hepatic transcription factors, including the PAR bZip proteins, Nrf2, and aspects of cholesterol homeostasis; these studies underscore mechanisms that culminate in altered cytochrome P450 gene expression and activity in response to both environmental toxins and physiological signals. Despite the detailed exploration of these regulatory pathways"}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "6"}]}, {"type": "t", "text": ", none of the reports extend their findings to implicate SNORD43 in these processes.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurthermore, additional studies using genetic knockdown or knockout models to investigate the roles of specific CYP2B isoforms in liver metabolism and drug sensitivity provide further insights into the complex networks of transcriptional regulators and signaling proteins involved in hepatic detoxification."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "7", "end_ref": "14"}]}, {"type": "t", "text": " In none of these instances is there evidence to suggest a role for SNORD43 beyond its canonical function in rRNA processing. Consequently, based on the provided literature, SNORD43 does not appear to play a direct role in the regulatory mechanisms underlying xenobiotic metabolism or cytochrome P450 expression.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Kanokwan Jarukamjorn, Tsutomu Sakuma, Nobuo Nemoto "}, {"type": "b", "children": [{"type": "t", "text": "Sexual dimorphic expression of mouse hepatic CYP2B: alterations during development or after hypophysectomy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Pharmacol (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0006-2952(02)00989-9"}], "href": "https://doi.org/10.1016/s0006-2952(02"}, {"type": "t", "text": "00989-9) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12093481"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12093481"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Carmela Gnerre, Gertrud U Schuster, Adrian Roth, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LXR deficiency and cholesterol feeding affect the expression and phenobarbital-mediated induction of cytochromes P450 in mouse liver."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Lipid Res (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1194/jlr.M400453-JLR200"}], "href": "https://doi.org/10.1194/jlr.M400453-JLR200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15930522"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15930522"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Frédéric Gachon, Fabienne Fleury Olela, Olivier Schaad, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The circadian PAR-domain basic leucine zipper transcription factors DBP, TEF, and HLF modulate basal and inducible xenobiotic detoxification."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Metab (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cmet.2006.04.015"}], "href": "https://doi.org/10.1016/j.cmet.2006.04.015"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16814730"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16814730"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Craig D Fisher, Jonathan P Jackson, Andrew J Lickteig, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Drug metabolizing enzyme induction pathways in experimental non-alcoholic steatohepatitis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Arch Toxicol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00204-008-0312-z"}], "href": "https://doi.org/10.1007/s00204-008-0312-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18488193"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18488193"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Xingguo Cheng, Curtis D Klaassen "}, {"type": "b", "children": [{"type": "t", "text": "Perfluorocarboxylic acids induce cytochrome P450 enzymes in mouse liver through activation of PPAR-alpha and CAR transcription factors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Toxicol Sci (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/toxsci/kfn147"}], "href": "https://doi.org/10.1093/toxsci/kfn147"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18648086"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18648086"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Antoine Amaury Lachaud, Sacha Auclair-Vincent, Laurent Massip, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Werner's syndrome helicase participates in transcription of phenobarbital-inducible CYP2B genes in rat and mouse liver."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Pharmacol (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bcp.2009.09.002"}], "href": "https://doi.org/10.1016/j.bcp.2009.09.002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19737542"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19737542"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Basma Damiri, Eric Holle, Xianzhong Yu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Lentiviral-mediated RNAi knockdown yields a novel mouse model for studying Cyp2b function."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Toxicol Sci (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/toxsci/kfr309"}], "href": "https://doi.org/10.1093/toxsci/kfr309"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22083726"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22083726"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Young Joo Park, Eun Kyung Lee, Yoon Kwang Lee, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Opposing regulation of cytochrome P450 expression by CAR and PXR in hypothyroid mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Toxicol Appl Pharmacol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.taap.2012.03.017"}], "href": "https://doi.org/10.1016/j.taap.2012.03.017"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22503787"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22503787"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Sharon A Meyer, Randy L Jirtle "}, {"type": "b", "children": [{"type": "t", "text": "Old dance with a new partner: EGF receptor as the phenobarbital receptor mediating Cyp2B expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Signal (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/scisignal.2004239"}], "href": "https://doi.org/10.1126/scisignal.2004239"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23652202"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23652202"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Takashi Ashino, Haruyo Ohkubo-Morita, Masayuki Yamamoto, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Possible involvement of nuclear factor erythroid 2-related factor 2 in the gene expression of Cyp2b10 and Cyp2a5."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Redox Biol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.redox.2013.12.025"}], "href": "https://doi.org/10.1016/j.redox.2013.12.025"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24494203"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24494203"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Takayuki Koga, Pei-Li Yao, Maryam Goudarzi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of Cytochrome P450 2B10 (CYP2B10) Expression in Liver by Peroxisome Proliferator-activated Receptor-β/δ Modulation of SP1 Promoter Occupancy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M116.755447"}], "href": "https://doi.org/10.1074/jbc.M116.755447"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27765815"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27765815"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Melissa M Heintz, Ramiya Kumar, Meredith M Rutledge, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cyp2b-null male mice are susceptible to diet-induced obesity and perturbations in lipid homeostasis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Nutr Biochem (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jnutbio.2019.05.004"}], "href": "https://doi.org/10.1016/j.jnutbio.2019.05.004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31202118"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31202118"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Atsushi Kawase, Hideyuki Mukai, Shunsuke Tateishi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Protein Kinase N Family Negatively Regulates Constitutive Androstane Receptor-Mediated Transcriptional Induction of Cytochrome P450 2b10 in the Livers of Mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Pharmacol Exp Ther (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1124/jpet.121.000790"}], "href": "https://doi.org/10.1124/jpet.121.000790"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34312179"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34312179"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Bryan Mackowiak, Mingjiang Xu, Yuhong Lin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Hepatic CYP2B10 is highly induced by binge ethanol and contributes to acute-on-chronic alcohol-induced liver injury."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Alcohol Clin Exp Res (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/acer.14954"}], "href": "https://doi.org/10.1111/acer.14954"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36224745"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36224745"}]}]}]}
Synonyms RNU43, U43
NCBI Gene ID 26807
API
Download Associations
Predicted Functions View SNORD43's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORD43's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORD43's ARCHS4 Predicted Functions.

Functional Associations

SNORD43 has 1,556 functional associations with biological entities spanning 4 categories (molecular profile, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.

Click the + buttons to view associations for SNORD43 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD43 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD43 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SNORD43 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD43 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD43 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORD43 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SNORD43 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of SNORD43 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SNORD43 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of SNORD43 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD43 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of SNORD43 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of SNORD43 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SNORD43 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD43 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.