SNORD4A Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, C/D box 4A
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
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The research highlights how loss or mutation of BLM leads to increased sister chromatid exchanges, chromosomal aberrations, and altered responses to DNA-damaging agents, thereby underscoring its tumor-suppressive and genome-stabilizing functions. These investigations also illustrate the impact of BLM deficiency on cellular processes such as homologous recombination efficiency, interhomolog crossover suppression, and even immune cell development."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "7", "end_ref": "12"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nNotably, while these abstracts provide rich insights into the mechanisms of BLM-mediated genome maintenance and their implications for cancer predisposition and cellular dysregulation, none address the function of SNORD4A. SNORD4A, a member of the small nucleolar RNA family typically involved in directing site-specific 2′-O-methylation of ribosomal RNA, is not mentioned or functionally characterized in any of the provided studies. Hence, the role of SNORD4A remains unelucidated in this body of literature, pointing to a gap that might be explored in future research to assess any potential interplay between RNA-guided modification mechanisms and the DNA repair pathways governed by proteins such as BLM."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "13", "end_ref": "18"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Kathleen Heppner Goss, Mary A Risinger, Jennifer J Kordich, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "BLM helicase is activated in BCR/ABL leukemia cells to modulate responses to cisplatin."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/sj.onc.1208545"}], "href": "https://doi.org/10.1038/sj.onc.1208545"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15750625"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15750625"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Nicholas Chester, Holger Babbe, Jan Pinkas, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "The Bloom's syndrome helicase is critical for development and function of the alphabeta T-cell lineage."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.01402-06"}], "href": "https://doi.org/10.1128/MCB.01402-06"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17210642"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17210642"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Jianmei Zhu, Shanshan Zhu, Catherine M Guzzo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Small ubiquitin-related modifier (SUMO) binding determines substrate recognition and paralog-selective SUMO modification."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M803632200"}], "href": "https://doi.org/10.1074/jbc.M803632200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18708356"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18708356"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Holger Babbe, Jennifer McMenamin, Elias Hobeika, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genomic instability resulting from Blm deficiency compromises development, maintenance, and function of the B cell lineage."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.182.1.347"}], "href": "https://doi.org/10.4049/jimmunol.182.1.347"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19109166"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19109166"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Karen A Urtishak, Kevin D Smith, Rebecca A Chanoux, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Timeless Maintains Genomic Stability and Suppresses Sister Chromatid Exchange during Unperturbed DNA Replication."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M806103200"}], "href": "https://doi.org/10.1074/jbc.M806103200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19112184"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19112184"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Parastoo Davari, Jennifer L Hebert, Donna G Albertson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of Blm enhances basal cell carcinoma and rhabdomyosarcoma tumorigenesis in Ptch1+/- mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Carcinogenesis (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/carcin/bgp309"}], "href": "https://doi.org/10.1093/carcin/bgp309"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19995795"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19995795"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Jeannine R Larocque, Maria Jasin "}, {"type": "b", "children": [{"type": "t", "text": "Mechanisms of recombination between diverged sequences in wild-type and BLM-deficient mouse and human cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.01553-09"}], "href": "https://doi.org/10.1128/MCB.01553-09"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20154148"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20154148"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "W K Chu, K Hanada, R Kanaar, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Heterozygous germline "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "BLM"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " mutations increase susceptibility to asbestos and mesothelioma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.2019652117"}], "href": "https://doi.org/10.1073/pnas.2019652117"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33318203"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33318203"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Pei-Hsin Huang, Tsung-Ying Yang, Chia-Wei Yeh, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Involvement of a BH3-only apoptosis sensitizer gene Blm-s in hippocampus-mediated mood control."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Transl Psychiatry (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41398-022-02184-6"}], "href": "https://doi.org/10.1038/s41398-022-02184-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36163151"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36163151"}]}]}]}
Synonyms Z17A, RNU101A, MGH18S-121
NCBI Gene ID 26773
API
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Predicted Functions View SNORD4A's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORD4A's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORD4A's ARCHS4 Predicted Functions.

Functional Associations

SNORD4A has 1,099 functional associations with biological entities spanning 4 categories (molecular profile, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 14 datasets.

Click the + buttons to view associations for SNORD4A from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD4A gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD4A gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SNORD4A gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD4A gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD4A gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD4A gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORD4A gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SNORD4A gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SNORD4A gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORD4A gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD4A gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of SNORD4A gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SNORD4A gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD4A gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.