| Name | small nucleolar RNA, C/D box 56B |
| Description | Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough neither abstract directly details SNORD56B, the study of ZRANB2 in BMP signaling provides insight into nuclear regulatory mechanisms that may offer context for how SNORD56B could function. In the first study, ZRANB2 was identified as a novel BMP suppressor that interacts with Smad1, Smad5, and Smad8 in the nucleus to inhibit BMP‐induced transcriptional activity without affecting Smad phosphorylation or DNA binding."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nSimilarly, the second study characterized the nuclear, arginine/serine-rich protein ZNF265, which regulates alternative splicing events in key neuronal transcripts. ZNF265 modulates exon inclusion in pre-mRNA, suggesting that precise control of RNA processing in the nucleus is critical for normal cellular and neuronal functions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nCollectively, these investigations underscore the pivotal role of nuclear factors in orchestrating gene expression through transcriptional and post‐transcriptional mechanisms. Although SNORD56B is not explicitly discussed in these abstracts, as a small nucleolar RNA typically residing in the nucleus, it is conceivable that SNORD56B may participate in the fine‐tuning of these processes—perhaps by contributing to rRNA modification or by indirectly influencing the regulatory pathways mediated by proteins like ZRANB2 and ZNF265. Further research is needed to clarify whether SNORD56B directly interfaces with such transcriptional or splicing regulators in these contexts."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Satoshi Ohte, Shoichiro Kokabu, Shun-ichiro Iemura, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification and functional analysis of Zranb2 as a novel Smad-binding protein that suppresses BMP signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.23408"}], "href": "https://doi.org/10.1002/jcb.23408"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22021003"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22021003"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Jing Li, Xian-hua Chen, Ping-jie Xiao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression pattern and splicing function of mouse ZNF265."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurochem Res (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11064-007-9461-3"}], "href": "https://doi.org/10.1007/s11064-007-9461-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17805964"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17805964"}]}]}]}
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| Synonyms | RNU56B |
| NCBI Gene ID | 319139 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNORD56B has 385 functional associations with biological entities spanning 4 categories (molecular profile, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.
Click the + buttons to view associations for SNORD56B from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD56B gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD56B gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of SNORD56B gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD56B gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD56B gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD56B gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SNORD56B gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of SNORD56B gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SNORD56B gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD56B gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of SNORD56B gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SNORD56B gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD56B gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |