SNORD57 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, C/D box 57
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent studies have revealed that what was once thought to represent a PIWI‐interacting RNA in serum—specifically piR‑54265—is in fact a full‐length (72 nt) small nucleolar RNA, now recognized as SNORD57. Although canonical snoRNAs are traditionally known for guiding chemical modifications of rRNAs and other RNAs within the nucleus, the detection of SNORD57 in serum has led to its mistaken characterization as a cancer biomarker. This finding underscores the importance of rigorous annotation methods to accurately differentiate between bona fide somatic piRNAs and other small RNAs, such as SNORD57, in translational studies targeting early cancer diagnosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}, {"type": "p", "children": [{"type": "t", "text": "\nIn a seemingly distinct line of research focusing on immune regulation, the potassium channel tetramerisation domain containing 9 (KCTD9) has been identified as a critical modulator of natural killer (NK) cell development and function. Elevated KCTD9 expression in NK cells has been observed in patients with HBV‐induced acute‐on‐chronic liver failure and experimental models of fulminant viral hepatitis—conditions where hyper‐active NK cell responses exacerbate liver damage. Functional studies have demonstrated that reduction or knockout of KCTD9 impairs NK cell lineage commitment, maturation, and effector functions such as cytokine secretion and cytotoxicity, thereby ameliorating liver injury in preclinical models."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "2", "end_ref": "4"}]}]}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Juan Pablo Tosar, María Rosa García-Silva, Alfonso Cayota "}, {"type": "b", "children": [{"type": "t", "text": "Circulating SNORD57 rather than piR-54265 is a promising biomarker for colorectal cancer: common pitfalls in the study of somatic piRNAs in cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1261/rna.078444.120"}], "href": "https://doi.org/10.1261/rna.078444.120"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33376191"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33376191"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Xiaoping Zhang, Lin Zhu, Yaoyong Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Interference with KCTD9 inhibits NK cell activation and ameliorates fulminant liver failure in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Immunol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12865-018-0256-x"}], "href": "https://doi.org/10.1186/s12865-018-0256-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29940856"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29940856"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xiaoping Zhang, Peng Wang, Tao Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Kctd9 Deficiency Impairs Natural Killer Cell Development and Effector Function."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Immunol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fimmu.2019.00744"}], "href": "https://doi.org/10.3389/fimmu.2019.00744"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31024568"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31024568"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yao-Yong Zhou, Yong Zou, Tao Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "[KCTD9, a novel potassium channel related gene, was highly expressed in hepatic NK cells and T cells of fulminant hepatitis mice induced by MHV-3]."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Zhonghua Gan Zang Bing Za Zhi (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3760/cma.j.issn.1007-3418.2011.11.010"}], "href": "https://doi.org/10.3760/cma.j.issn.1007-3418.2011.11.010"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22433305"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22433305"}]}]}]}
Synonyms RNU57, U57
NCBI Gene ID 26792
API
Download Associations
Predicted Functions View SNORD57's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORD57's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORD57's ARCHS4 Predicted Functions.

Functional Associations

SNORD57 has 800 functional associations with biological entities spanning 5 categories (molecular profile, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.

Click the + buttons to view associations for SNORD57 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD57 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD57 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SNORD57 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD57 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD57 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORD57 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing SNORD57 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SNORD57 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of SNORD57 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SNORD57 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of SNORD57 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SNORD57 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORD57 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD57 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of SNORD57 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD57 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.