SNORD63 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, C/D box 63
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nIn myelodysplastic syndromes (MDS), deletions at chromosome 5q31.2 are frequent and affect a cluster of 28 genes, one of which is SNORD63, a small nucleolar RNA (snoRNA) belonging to the Box C/D family. SnoRNAs like SNORD63 typically guide site‐specific 2′-O-methylation of ribosomal RNA, a process critical for proper rRNA processing, stability, and ribosome assembly, thereby influencing protein synthesis in hematopoietic cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}, {"type": "p", "children": [{"type": "t", "text": "\nThe study assessed both coding and noncoding genes in the deleted region of 5q31.2 and demonstrated that individual point mutations or microdeletions were uncommon; instead, a 50% reduction in expression (haploinsufficiency) was observed for multiple genes in del(5q) MDS samples. This reduction in dose includes noncoding elements like SNORD63, suggesting that insufficient SNORD63 levels may impair the critical 2′-O-methylation events required for efficient rRNA modification and ribosome function."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}, {"type": "p", "children": [{"type": "t", "text": "\nWhile no complete loss of expression or somatic mutations of SNORD63 were detected, its diminished expression as part of the broader multi-gene haploinsufficiency in the 5q31.2 deletion region may contribute collectively to the pathogenesis of MDS. In this context, the reduced function of SNORD63 likely exacerbates defects in ribosome biogenesis and cellular protein synthesis, thereby playing a role in the complex molecular mechanism underlying the disease."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}]}]}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Timothy A Graubert, Michelle A Payton, Jin Shao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Integrated genomic analysis implicates haploinsufficiency of multiple chromosome 5q31.2 genes in de novo myelodysplastic syndromes pathogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0004583"}], "href": "https://doi.org/10.1371/journal.pone.0004583"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19240791"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19240791"}]}]}]}
Synonyms RNU63, U63, SNORD63A
NCBI Gene ID 26785
API
Download Associations
Predicted Functions View SNORD63's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORD63's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORD63's ARCHS4 Predicted Functions.

Functional Associations

SNORD63 has 398 functional associations with biological entities spanning 5 categories (molecular profile, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.

Click the + buttons to view associations for SNORD63 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD63 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD63 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD63 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORD63 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GAD Gene-Disease Associations diseases associated with SNORD63 gene in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SNORD63 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SNORD63 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of SNORD63 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with SNORD63 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORD63 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD63 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of SNORD63 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of SNORD63 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SNORD63 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD63 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.