SNORD86 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, C/D box 86
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
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This lethal hit mechanism limits the intracellular proliferation of pathogens such as Listeria monocytogenes and Salmonella, while also influencing the export of cytokines; for example, dendritic cell–derived IL-33 can be released via a perforin-2–dependent conduit, thereby modulating inflammatory and regulatory immune responses."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "2", "end_ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its direct microbicidal function, perforin-2 contributes to the coordination of innate and adaptive immunity. It is recruited to antigen-containing vesicles in dendritic cells, where its pore-forming activity facilitates the escape of internalized proteins into the cytosol—a key step in antigen cross-presentation and subsequent CD8+ T cell priming. Moreover, perforin-2 associates with components of the type I interferon receptor complex, promoting proper assembly of the receptor-proximal signaling machinery, and thus influences downstream JAK-STAT activation. Although some studies report conflicting observations regarding its overall impact on antibacterial and antiviral responses, this molecule appears to play a focused role early in the adaptive immune response, affecting both antigen presentation and the regulation of inflammatory cascades."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "7", "end_ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Søren Lykke-Andersen, Britt Kidmose Ardal, Anne Kruse Hollensen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Box C/D snoRNP Autoregulation by a cis-Acting snoRNA in the NOP56 Pre-mRNA."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molcel.2018.08.017"}], "href": "https://doi.org/10.1016/j.molcel.2018.08.017"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30220559"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30220559"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Ryan McCormack, Lesley R de Armas, Motoaki Shiratsuchi, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Perforin-2 Protects Host Cells and Mice by Restricting the Vacuole to Cytosol Transitioning of a Bacterial Pathogen."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Infect Immun (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/IAI.01434-15"}], "href": "https://doi.org/10.1128/IAI.01434-15"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26831467"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26831467"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Fangfang Bai, Ryan M McCormack, Suzanne Hower, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Perforin-2 Breaches the Envelope of Phagocytosed Bacteria Allowing Antimicrobial Effectors Access to Intracellular Targets."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.1800365"}], "href": "https://doi.org/10.4049/jimmunol.1800365"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30249808"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30249808"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Li-Yin Hung, Yukinori Tanaka, Karl Herbine, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cellular context of IL-33 expression dictates impact on anti-helminth immunity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Immunol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/sciimmunol.abc6259"}], "href": "https://doi.org/10.1126/sciimmunol.abc6259"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33188058"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33188058"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Irena Pastar, Andrew P Sawaya, Jelena Marjanovic, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Intracellular Staphylococcus aureus triggers pyroptosis and contributes to inhibition of healing due to perforin-2 suppression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI133727"}], "href": "https://doi.org/10.1172/JCI133727"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34730110"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34730110"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Ryan McCormack, Richard Hunte, Eckhard R Podack, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An Essential Role for Perforin-2 in Type I IFN Signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.1901013"}], "href": "https://doi.org/10.4049/jimmunol.1901013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32161097"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32161097"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Pablo Rodríguez-Silvestre, Marco Laub, Patrycja A Krawczyk, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Perforin-2 is a pore-forming effector of endocytic escape in cross-presenting dendritic cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Science (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/science.adg8802"}], "href": "https://doi.org/10.1126/science.adg8802"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37347855"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37347855"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Salimeh Ebrahimnezhaddarzi, Catherina H Bird, Cody C Allison, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mpeg1 is not essential for antibacterial or antiviral immunity, but is implicated in antigen presentation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Immunol Cell Biol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/imcb.12554"}], "href": "https://doi.org/10.1111/imcb.12554"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35471730"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35471730"}]}]}]}
Synonyms U86
NCBI Gene ID 692201
API
Download Associations
Predicted Functions View SNORD86's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORD86's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORD86's ARCHS4 Predicted Functions.

Functional Associations

SNORD86 has 1,191 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.

Click the + buttons to view associations for SNORD86 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD86 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD86 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SNORD86 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD86 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD86 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORD86 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing SNORD86 from the GeneSigDB Published Gene Signatures dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SNORD86 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SNORD86 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORD86 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD86 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of SNORD86 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD86 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.