SNORD88A Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, C/D box 88A
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe study identified several novel regulators of adipocyte differentiation through treatment with anti‐adipogenic phytochemicals in C3H10T1/2 adipocytes. Notably, the research focused on genes such as Phf16, Pnpla3, Cxcl1, Hmox1, and G0s2, which modulate lipid accumulation and adipocyte marker expression. Although SNORD88A—a small nucleolar RNA typically involved in RNA modification processes—was not examined or mentioned in these analyses, its potential indirect contribution to adipogenesis or RNA regulation in adipose biology remains an open question."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "Dis primis duis mauris potenti non at sociosqu ultricies massa. Tincidunt vel sagittis quam convallis varius phasellus tincidunt. Given the current focus on transcriptional and post‐transcriptional regulators in adipogenesis showcased by the study, further investigations are warranted to determine whether SNORD88A might play a subtle or context‐dependent role in these regulatory networks. This gap highlights an opportunity for subsequent studies to evaluate the involvement of SNORD88A in adipocyte biology and metabolic regulation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Seo-Hyuk Chang, Ui Jeong Yun, Jin Hee Choi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of Phf16 and Pnpla3 as new adipogenic factors regulated by phytochemicals."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.27637"}], "href": "https://doi.org/10.1002/jcb.27637"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30272815"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30272815"}]}]}]}
Synonyms HBII-180A
NCBI Gene ID 692202
API
Download Associations
Predicted Functions View SNORD88A's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORD88A's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORD88A's ARCHS4 Predicted Functions.

Functional Associations

SNORD88A has 610 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.

Click the + buttons to view associations for SNORD88A from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD88A gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD88A gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SNORD88A gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD88A gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD88A gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD88A gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORD88A gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
ESCAPE Omics Signatures of Genes and Proteins for Stem Cells PubMedIDs of publications reporting gene signatures containing SNORD88A from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SNORD88A gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORD88A gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORD88A gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of SNORD88A gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORD88A gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.