| HGNC Family | Non-coding RNAs |
| Name | small nucleolar RNA, C/D box 9 |
| Description | Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nA review of the provided abstracts reveals detailed insights into the regulation of neural stem cell differentiation, Notch signaling (via Hes effectors), and the functions of related co-activators such as MAMLD1. Notably, however, none of these texts explicitly address the function of SNORD9. In general, snoRNAs—of which SNORD9 is a member—are typically involved in the chemical modification and processing of ribosomal RNAs and other RNA substrates. This well‐established role contrasts with the developmental and transcriptional regulatory themes emphasized in the abstracts."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nThe first abstract"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "describes how proper timing and maintenance of neural stem cells depend on Notch effectors such as the Hes gene family. Although SNORD9 is not discussed, its general function in RNA processing might, in other contexts, contribute to the fine‐regulation of gene expression in similar developmental pathways.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the abstracts dealing with MAMLD1"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ", the focus is on its role in transactivation of the Hes3 promoter—a noncanonical Notch target—with implications for testosterone production and disorders such as hypospadias. While these studies shed light on transcriptional regulation during development, they do not explore potential contributions of small nucleolar RNAs like SNORD9 to these regulatory networks.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurther, research on Hes3 in the context of neural plasticity, remyelination, and ocular anterior segment maintenance"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "highlights the importance of Hes3 in cell survival and tissue regeneration. Although these studies provide valuable biomarkers and experimental models, any direct or indirect involvement of SNORD9 in such processes remains unexplored.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, while the abstracts collectively emphasize molecular pathways impacting neural development, cell differentiation, and steroidogenesis, they do not provide any information on the function of SNORD9. Given that SNORD9 is generally classified as a small nucleolar RNA involved in RNA modification, its potential role in modulating or fine-tuning gene expression in these developmental contexts has yet to be elucidated and warrants further investigation.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jun Hatakeyama, Yasumasa Bessho, Kazuo Katoh, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Hes genes regulate size, shape and histogenesis of the nervous system by control of the timing of neural stem cell differentiation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.01436"}], "href": "https://doi.org/10.1242/dev.01436"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15496443"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15496443"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Maki Fukami, Yuka Wada, Michiyo Okada, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mastermind-like domain-containing 1 (MAMLD1 or CXorf6) transactivates the Hes3 promoter, augments testosterone production, and contains the SF1 target sequence."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M703289200"}], "href": "https://doi.org/10.1074/jbc.M703289200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18162467"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18162467"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Michiko Nakamura, Maki Fukami, Fumihiro Sugawa, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mamld1 knockdown reduces testosterone production and Cyp17a1 expression in mouse Leydig tumor cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0019123"}], "href": "https://doi.org/10.1371/journal.pone.0019123"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21559465"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21559465"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Matina Economopoulou, Jimmy Masjkur, Frederik Raiskup, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression of the transcription factor Hes3 in the mouse and human ocular surface, and in pterygium."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Radiat Biol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3109/09553002.2014.892228"}], "href": "https://doi.org/10.3109/09553002.2014.892228"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24512568"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24512568"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Louiza Toutouna, Polyxeni Nikolakopoulou, Steven W Poser, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Hes3 expression in the adult mouse brain is regulated during demyelination and remyelination."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Brain Res (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.brainres.2016.03.014"}], "href": "https://doi.org/10.1016/j.brainres.2016.03.014"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27018293"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27018293"}]}]}]}
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| Synonyms | MGU6-53B |
| NCBI Gene ID | 692053 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNORD9 has 232 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.
Click the + buttons to view associations for SNORD9 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD9 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD9 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of SNORD9 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD9 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD9 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORD9 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SNORD9 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of SNORD9 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of SNORD9 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORD9 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SNORD9 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORD9 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of SNORD9 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |