| Name | SOX9 antisense RNA 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nSOX9‐AS1 is a long non‐coding RNA located adjacent to the oncogenic transcription factor SOX9, and in hepatocellular carcinoma (HCC) it is markedly upregulated. In this cancer type, SOX9‐AS1 drives tumor progression by sponging miR-5590-3p, which in turn elevates SOX9 expression. SOX9 then transcriptionally activates SOX9‐AS1, forming a positive feedback loop that promotes cell proliferation, migration, invasion, and ultimately epithelial-to-mesenchymal transition via activation of the Wnt/β-catenin signaling pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn intrahepatic cholangiocarcinoma (ICC), preliminary investigations have evaluated the clinical relevance and therapeutic potential of SOX9‐AS1. Although details regarding its mechanistic role in ICC remain to be fully elucidated, its expression is emerging as a promising biomarker and potential target for treatment interventions in this aggressive malignancy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn a contrasting tumor context, triple-negative breast cancer (TNBC) and basal-like breast cancers display elevated levels of SOX9‐AS1, with its expression predominantly localized in the cytoplasm. Intriguingly, while SOX9‐AS1 is overexpressed in these subtypes, functional studies indicate that its knockdown leads to increased triglyceride synthesis, cell migration, and invasion, suggesting that SOX9‐AS1 may act to temper the aggressive behavior of TNBC cells. This observation is supported by survival analyses showing that high SOX9‐AS1 levels are associated with improved clinical outcomes, likely through the regulation of lipid metabolism and epithelial-to-mesenchymal transition."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Wei Zhang, Yanhui Wu, Bingwu Hou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A SOX9-AS1/miR-5590-3p/SOX9 positive feedback loop drives tumor growth and metastasis in hepatocellular carcinoma through the Wnt/β-catenin pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Oncol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/1878-0261.12560"}], "href": "https://doi.org/10.1002/1878-0261.12560"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31402556"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31402556"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Lupeng Wu, Jingrui Yang, Rui-Sheng Ke, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Impact of lncRNA SOX9-AS1 overexpression on the prognosis and progression of intrahepatic cholangiocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Res Hepatol Gastroenterol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.clinre.2022.101999"}], "href": "https://doi.org/10.1016/j.clinre.2022.101999"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35870795"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35870795"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Mireya Cisneros-Villanueva, Marco Antonio Fonseca-Montaño, Magdalena Ríos-Romero, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA SOX9-AS1 triggers a transcriptional program involved in lipid metabolic reprogramming, cell migration and invasion in triple-negative breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-024-51947-2"}], "href": "https://doi.org/10.1038/s41598-024-51947-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38233470"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38233470"}]}]}]}
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| NCBI Gene ID | 400618 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SOX9-AS1 has 328 functional associations with biological entities spanning 3 categories (disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.
Click the + buttons to view associations for SOX9-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of SOX9-AS1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of SOX9-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of SOX9-AS1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of SOX9-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of SOX9-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GWAS Catalog SNP-Phenotype Associations | phenotypes associated with SOX9-AS1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SOX9-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |