SPATA13-AS1 Gene

Name SPATA13 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe studies summarized here advance our understanding of cellular signaling and differentiation, although neither directly characterizes SPATA13‑AS1. One study (PMID"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "details the modular organization of RGS-PX proteins—members of the sorting nexin family—and shows that sequence variations in their phosphoinositide-binding PX domains can influence their localization and activity in cell signaling and trafficking. Meanwhile, another investigation (PMID"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "describes the development of a cell culture system for real‑time and noninvasive tracking of chondrogenic differentiation, providing a tool to explore differentiation pathways.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAlthough SPATA13‑AS1 is not expressly mentioned or functionally examined in these abstracts, the insights provided into the mechanisms governing membrane interactions and cell differentiation lay the groundwork for future research. In this context, SPATA13‑AS1—a noncoding transcript potentially involved in regulatory networks—might be explored for its role in modulating intracellular trafficking or differentiation processes similar to those detailed in the reports above. Such investigations could ultimately reveal whether SPATA13‑AS1 intersects with these pathways to influence cell fate decisions.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Caroline Mas, Suzanne J Norwood, Andrea Bugarcic, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structural basis for different phosphoinositide specificities of the PX domains of sorting nexins regulating G-protein signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M114.595959"}], "href": "https://doi.org/10.1074/jbc.M114.595959"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25148684"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25148684"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Akinori Kan, Toshiyuki Ikeda, Taku Saito, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Screening of chondrogenic factors with a real-time fluorescence-monitoring cell line ATDC5-C2ER: identification of sorting nexin 19 as a novel factor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Arthritis Rheum (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/art.24878"}], "href": "https://doi.org/10.1002/art.24878"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19877062"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19877062"}]}]}]}
NCBI Gene ID 100874231
API
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Predicted Functions View SPATA13-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View SPATA13-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SPATA13-AS1's ARCHS4 Predicted Functions.

Functional Associations

SPATA13-AS1 has 152 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 5 datasets.

Click the + buttons to view associations for SPATA13-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SPATA13-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SPATA13-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SPATA13-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SPATA13-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SPATA13-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.