SPATA31C2 Gene

Name SPATA31 subfamily C, member 2
Description Predicted to be involved in cell differentiation and spermatogenesis. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe provided abstracts focus on transmembrane inner ear protein (TMIE), a critical component of the mechanotransduction machinery in auditory hair cells. TMIE is essential for normal hearing because its loss or mutation disrupts the formation and proper function of the mechanotransduction complex. In mouse models, deletion or truncating mutations of the TMIE gene lead to abnormal hair cell stereocilia and consequent hearing loss as well as vestibular dysfunction, underscoring its vital role in the development, maturation, and maintenance of inner ear structures."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": "\n\nFurthermore, TMIE acts at the molecular level as an indispensable subunit of the mechanotransduction channel complex. It not only forms a ternary complex with tip-link molecules such as protocadherin 15 (PCDH15) and its binding partner TMHS/LHFPL5 but also physically interacts with the channel-forming TMC1/2 proteins. Notably, the C-terminal domain of TMIE engages in phospholipid interactions (for example, with PIP2), which appear to modulate ion channel properties including unitary conductance and ion selectivity. Additionally, alternative splicing events in TMIE and its associated proteins further diversify the compositions of the mechanotransduction complex, suggesting an additional layer of regulation in auditory function."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "6"}]}, {"type": "t", "text": "\n\nFinally, studies employing tmie-overexpression in transgenic mouse models demonstrate that restoring appropriate levels of TMIE can ameliorate the behavioral and auditory deficits caused by its loss. This therapeutic rescue emphasizes the importance of precise TMIE expression for proper mechanotransduction and hair cell function."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Kristina L Mitchem, Ellen Hibbard, Lisa A Beyer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mutation of the novel gene Tmie results in sensory cell defects in the inner ear of spinner, a mouse model of human hearing loss DFNB6."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/11.16.1887"}], "href": "https://doi.org/10.1093/hmg/11.16.1887"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12140191"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12140191"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Kyoung In Cho, Jun-Gyo Suh, Jeong Woong Lee, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The circling mouse (C57BL/6J-cir) has a 40-kilobase genomic deletion that includes the transmembrane inner ear (tmie) gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Comp Med (2006)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17219777"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17219777"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Seojin Park, Jeong-Han Lee, Hyun-Ju Cho, et al. "}, {"type": "b", "children": [{"type": "t", "text": "tmie Is required for gentamicin uptake by the hair cells of mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Comp Med (2013)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23582420"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23582420"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Bo Zhao, Zizhen Wu, Nicolas Grillet, et al. "}, {"type": "b", "children": [{"type": "t", "text": "TMIE is an essential component of the mechanotransduction machinery of cochlear hair cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuron (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuron.2014.10.041"}], "href": "https://doi.org/10.1016/j.neuron.2014.10.041"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25467981"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25467981"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Christopher L Cunningham, Xufeng Qiu, Zizhen Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "TMIE Defines Pore and Gating Properties of the Mechanotransduction Channel of Mammalian Cochlear Hair Cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuron (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuron.2020.03.033"}], "href": "https://doi.org/10.1016/j.neuron.2020.03.033"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32343945"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32343945"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Zijing Zhou, Xiaojie Yu, Biaobin Jiang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Alternative Splicing of Three Genes Encoding Mechanotransduction-Complex Proteins in Auditory Hair Cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "eNeuro (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1523/ENEURO.0381-20.2020"}], "href": "https://doi.org/10.1523/ENEURO.0381-20.2020"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33509951"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33509951"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Mi Jung Shin, Jeong-Han Lee, Dong Hoon Yu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Ectopic expression of tmie transgene induces various recovery levels of behavior and hearing ability in the circling mouse."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2008.06.064"}], "href": "https://doi.org/10.1016/j.bbrc.2008.06.064"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18586001"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18586001"}]}]}]}
Synonyms FAM75C2
Proteins S31C2_HUMAN
NCBI Gene ID 645961
API
Download Associations
Predicted Functions View SPATA31C2's ARCHS4 Predicted Functions.
Co-expressed Genes View SPATA31C2's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SPATA31C2's ARCHS4 Predicted Functions.

Functional Associations

SPATA31C2 has 654 functional associations with biological entities spanning 8 categories (molecular profile, organism, functional term, phrase or reference, disease, phenotype or trait, chemical, structural feature, cell line, cell type or tissue, gene, protein or microRNA) extracted from 26 datasets.

Click the + buttons to view associations for SPATA31C2 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SPATA31C2 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
BioGPS Cell Line Gene Expression Profiles cell lines with high or low expression of SPATA31C2 gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset.
BioGPS Human Cell Type and Tissue Gene Expression Profiles cell types and tissues with high or low expression of SPATA31C2 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SPATA31C2 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of SPATA31C2 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SPATA31C2 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SPATA31C2 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SPATA31C2 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing SPATA31C2 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of SPATA31C2 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of SPATA31C2 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SPATA31C2 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of SPATA31C2 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GO Biological Process Annotations 2015 biological processes involving SPATA31C2 gene from the curated GO Biological Process Annotations 2015 dataset.
GO Cellular Component Annotations 2015 cellular components containing SPATA31C2 protein from the curated GO Cellular Component Annotations 2015 dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SPATA31C2 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with SPATA31C2 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
InterPro Predicted Protein Domain Annotations protein domains predicted for SPATA31C2 protein from the InterPro Predicted Protein Domain Annotations dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of SPATA31C2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SPATA31C2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SPATA31C2 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of SPATA31C2 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of SPATA31C2 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of SPATA31C2 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of SPATA31C2 gene from the RummaGEO Gene Perturbation Signatures dataset.
TargetScan Predicted Nonconserved microRNA Targets microRNAs regulating expression of SPATA31C2 gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset.