SPOUT1 Gene

Name SPOUT domain containing methyltransferase 1
Description Enables miRNA binding activity. Involved in maintenance of centrosome location and miRNA processing. Acts upstream of with a positive effect on post-transcriptional regulation of gene expression. Located in kinetochore; mitotic spindle; and spindle pole centrosome. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nSCMH1, a mammalian homolog of Drosophila Sex comb on midleg, functions as an integral component of Polycomb repressive complex 1 (PRC1) during key developmental stages. In male germ cells undergoing meiotic prophase, SCMH1 is essential for mediating sequential chromatin modifications, especially through its exclusion from the XY body at late pachytene. Loss of SCMH1 leads to defects in these chromatin transitions and the apoptotic elimination of spermatocytes, underscoring its regulatory role in maintaining proper gene repression during meiosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn hematopoietic cells, SCMH1 is also critical for transcriptional silencing mediated by PRC1. Here, its interaction with geminin supports the maintenance of homeostatic gene expression, as seen by the derepression of key Hox genes such as Hoxb4 and Hoxa9 in its absence. Through the formation of E3 ubiquitin ligase complexes with these transcription factors, SCMH1 contributes indirectly to geminin stability, revealing a tight regulatory circuit that balances protein turnover and transcriptional control."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAlthough distinct from SCMH1’s roles in chromatin and transcription regulation, proper cell division requires the coordinated function of multiple factors such as the centrosomal protein CENP-32. Depletion of CENP-32 results in the release of centrosomes from the spindle apparatus, yet the assembly of a functional anastral spindle permits accurate chromosome alignment and segregation. This study underscores the complexity of intracellular machinery ensuring faithful mitosis, reminding us that while SCMH1 and PRC1 maintain epigenetic integrity, other proteins guarantee the correct physical partitioning of chromosomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its roles in development and cell cycle regulation, SCMH1 is also linked to pathological conditions through its circular RNA isoform, circSCMH1. In the context of diabetic retinopathy, elevated levels of circSCMH1 contribute to epithelial-mesenchymal transition (EMT) in retinal pigment epithelial cells by modulating the miR-200a-3p/ZEB1 axis. Downregulation of circSCMH1 rescues these cellular alterations, suggesting that targeted modulation of the circRNA may offer novel therapeutic opportunities to mitigate EMT and subsequent retinal damage in diabetes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yuki Takada, Kyo-ichi Isono, Jun Shinga, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mammalian Polycomb Scmh1 mediates exclusion of Polycomb complexes from the XY body in the pachytene spermatocytes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.02747"}], "href": "https://doi.org/10.1242/dev.02747"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17215307"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17215307"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Shin'ichiro Yasunaga, Motoaki Ohtsubo, Yoshinori Ohno, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Scmh1 has E3 ubiquitin ligase activity for geminin and histone H2A and regulates geminin stability directly or indirectly via transcriptional repression of Hoxa9 and Hoxb4."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.00974-12"}], "href": "https://doi.org/10.1128/MCB.00974-12"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23207902"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23207902"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Shinya Ohta, Laura Wood, Iyo Toramoto, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CENP-32 is required to maintain centrosomal dominance in bipolar spindle assembly."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.E14-09-1366"}], "href": "https://doi.org/10.1091/mbc.E14-09-1366"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25657325"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25657325"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Ye He, Xiang-Tao Hou, Yu-Xin Guan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CircRNA SCMH1 regulates the miR-200a-3p/ZEB1 signaling axis to promote diabetes-induced retinal epithelial-mesenchymal transition."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Eye Res (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.exer.2022.109264"}], "href": "https://doi.org/10.1016/j.exer.2022.109264"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36162459"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36162459"}]}]}]}
NCBI Gene ID 51490
API
Download Associations
Predicted Functions View SPOUT1's ARCHS4 Predicted Functions.
Co-expressed Genes View SPOUT1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SPOUT1's ARCHS4 Predicted Functions.

Functional Associations

SPOUT1 has 1,708 functional associations with biological entities spanning 6 categories (chemical, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 36 datasets.

Click the + buttons to view associations for SPOUT1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SPOUT1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of SPOUT1 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CCLE Cell Line Proteomics Cell lines associated with SPOUT1 protein from the CCLE Cell Line Proteomics dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of SPOUT1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
ClinVar Gene-Phenotype Associations 2025 phenotypes associated with SPOUT1 gene from the curated ClinVar Gene-Phenotype Associations 2025 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of SPOUT1 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing SPOUT1 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with SPOUT1 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with SPOUT1 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with SPOUT1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Phenotype Associations phenotypes associated with SPOUT1 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset.
GO Biological Process Annotations 2023 biological processes involving SPOUT1 gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving SPOUT1 gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2023 cellular components containing SPOUT1 protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Cellular Component Annotations 2025 cellular components containing SPOUT1 protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by SPOUT1 gene from the curated GO Molecular Function Annotations 2023 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by SPOUT1 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of SPOUT1 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of SPOUT1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with SPOUT1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of SPOUT1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of SPOUT1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of SPOUT1 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by SPOUT1 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
MoTrPAC Rat Endurance Exercise Training tissue samples with high or low expression of SPOUT1 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of SPOUT1 gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of SPOUT1 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of SPOUT1 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of SPOUT1 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of SPOUT1 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of SPOUT1 gene from the RummaGEO Gene Perturbation Signatures dataset.
Sanger Dependency Map Cancer Cell Line Proteomics cell lines associated with SPOUT1 protein from the Sanger Dependency Map Cancer Cell Line Proteomics dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of SPOUT1 gene from the Sci-Plex Drug Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of SPOUT1 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of SPOUT1 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with SPOUT1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.