| Name | SREBF pathway regulator in golgi 1 |
| Description | Involved in positive regulation of SREBP signaling pathway. Located in Golgi membrane. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nSPRING (also known as C12ORF49) is a glycosylated, Golgi‐resident membrane protein that plays a pivotal role in regulating lipid homeostasis by modulating the sterol‐regulatory element binding protein (SREBP) pathway. In particular, SPRING is essential for the proper trafficking and function of the SREBP cleavage‐activating protein (SCAP), ensuring the efficient processing of the SREBP precursor. Loss of SPRING results in mislocalization of SCAP and diminished nuclear SREBP signaling, which impairs the transcriptional control of lipid biosynthesis genes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional studies have uncovered that SPRING functions as a crucial cofactor for site‐1 protease (S1P) maturation. By facilitating the conversion of S1P from its inactive precursors into its mature forms, SPRING supports the proteolytic activation of SREBP and other substrates that govern lipid metabolism and the unfolded protein response. This molecular mechanism underscores the broader impact of SPRING on maintaining cholesterol and lipid balance in cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurther insights have emerged from genome‐wide genetic interaction screens in cells with disrupted de novo fatty acid synthesis. In these studies, SPRING—initially identified as an uncharacterized factor termed LUR1—was shown to regulate exogenous lipid uptake by modulating SREBF2 signaling during lipid starvation, thereby acting as a metabolic buffering agent when endogenous lipid production is compromised."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nComplementary work has also demonstrated that SPRING’s role in lipid metabolism extends in vivo. Its interaction with the membrane‐bound transcription factor peptidase, site 1 (MBTPS1), is necessary for proper SREBP cleavage, and its depletion in zebrafish models leads to impaired dietary lipid clearance. Moreover, human studies have associated genetic variants in SPRING with hyperlipidaemia, further highlighting its critical function in cholesterol and fatty acid regulation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFinally, emerging evidence suggests a clinical dimension to SPRING’s function. Altered expression of SPRING has been linked to tumor growth and prognosis in colorectal cancer, indicating that its regulation of lipid metabolic pathways may also contribute to cancer biology and serve as a potential therapeutic target."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Anke Loregger, Matthijs Raaben, Joppe Nieuwenhuis, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Haploid genetic screens identify SPRING/C12ORF49 as a determinant of SREBP signaling and cholesterol metabolism."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-020-14811-1"}], "href": "https://doi.org/10.1038/s41467-020-14811-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32111832"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32111832"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Jian Xiao, Yanni Xiong, Liu-Ting Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "POST1/C12ORF49 regulates the SREBP pathway by promoting site-1 protease maturation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Protein Cell (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s13238-020-00753-3"}], "href": "https://doi.org/10.1007/s13238-020-00753-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32666500"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32666500"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Michael Aregger, Keith A Lawson, Maximillian Billmann, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Systematic mapping of genetic interactions for de novo fatty acid synthesis identifies C12orf49 as a regulator of lipid metabolism."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Metab (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s42255-020-0211-z"}], "href": "https://doi.org/10.1038/s42255-020-0211-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32694731"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32694731"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Erol C Bayraktar, Konnor La, Kara Karpman, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Metabolic coessentiality mapping identifies C12orf49 as a regulator of SREBP processing and cholesterol metabolism."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Metab (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s42255-020-0206-9"}], "href": "https://doi.org/10.1038/s42255-020-0206-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32694732"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32694732"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Yiming Tao, Jia Luo, Hongyi Zhu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Chromosome 12 Open Reading Frame 49 Promotes Tumor Growth and Predicts Poor Prognosis in Colorectal Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dig Dis Sci (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10620-022-07751-x"}], "href": "https://doi.org/10.1007/s10620-022-07751-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36348128"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36348128"}]}]}]}
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| NCBI Gene ID | 79794 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SPRING1 has 1,674 functional associations with biological entities spanning 5 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 20 datasets.
Click the + buttons to view associations for SPRING1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of SPRING1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| Carcinogenome Chemical Perturbation Carcinogenicity Signatures | small molecule perturbations changing expression of SPRING1 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with SPRING1 gene from the CellMarker Gene-Cell Type Associations dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of SPRING1 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| GlyGen Glycosylated Proteins | ligands (chemical) binding SPRING1 protein from the GlyGen Glycosylated Proteins dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving SPRING1 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing SPRING1 protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of SPRING1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of SPRING1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with SPRING1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of SPRING1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of SPRING1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| LINCS L1000 CMAP Chemical Perturbation Consensus Signatures | small molecule perturbations changing expression of SPRING1 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset. | |
| Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of SPRING1 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of SPRING1 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of SPRING1 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of SPRING1 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of SPRING1 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of SPRING1 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Sci-Plex Drug Perturbation Signatures | drug perturbations changing expression of SPRING1 gene from the Sci-Plex Drug Perturbation Signatures dataset. | |