ST7-OT4 Gene

Name ST7 overlapping transcript 4
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe DEAD-box RNA helicases expressed during murine spermatogenesis exhibit distinct spatial and temporal patterns that ensure normal germ cell development. In one study, the Y-linked gene Dby (also known as Ddx3y) was shown to generate two transcripts that differ only in their 3′-untranslated regions and are ubiquitously expressed in both male germ cells and Sertoli cells. While Dby is most abundant in type A spermatogonia and increases during early embryonic gonadal development before declining postnatally, its expression pattern mirrors that of the X-linked homolog Ddx3x, suggesting a potential redundancy in function. Moreover, the autosomal homolog D1Pas1 is predominantly expressed in later stages––namely, in pachytene spermatocytes and round spermatids––implying that, due to meiotic sex chromosome inactivation, Dby and Ddx3x functions are supplanted by this autosomal gene."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn a complementary investigation, deletion of the autosomal DEAD-box helicase D1Pas1 in mice revealed its critical role during the late pachytene stage of the first meiotic prophase in male germ cells. Although D1Pas1-deficient females exhibited normal reproductive performance, the knockout males were completely sterile, with spermatogenesis halting before the formation of spermatids and spermatozoa. Notably, despite normal early meiotic chromosome behavior and no significant upregulation of retrotransposons (as observed with other helicase deficiencies), the absence of D1Pas1 culminated in a failure to progress beyond the late pachytene phase. These observations underscore D1Pas1’s essential function in the maturation of male germ cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nCollectively, these findings highlight that, although multiple DEAD-box RNA helicases are expressed during mouse spermatogenesis, each fulfills a specialized role at defined developmental stages. Whereas Dby (Ddx3y) and its X-linked counterpart may have overlapping or compensatory functions, the autosomal D1Pas1 appears indispensable for the transition through the late pachytene stage, ensuring that only fully competent spermatocytes progress to form mature spermatozoa. While these abstracts do not directly address ST7-OT4, the data imply that similar tightly regulated expression and functional specialization among DEAD-box helicases, potentially including transcripts like ST7-OT4, are crucial for orchestrating the complex processes of germ cell differentiation and meiotic progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Queenie P Vong, Yunmin Li, Yun-Fai Chris Lau, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structural characterization and expression studies of Dby and its homologs in the mouse."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Androl (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2164/jandrol.106.000471"}], "href": "https://doi.org/10.2164/jandrol.106.000471"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16728723"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16728723"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Hiroki Inoue, Narumi Ogonuki, Michiko Hirose, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mouse D1Pas1, a DEAD-box RNA helicase, is required for the completion of first meiotic prophase in male germ cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2016.07.109"}], "href": "https://doi.org/10.1016/j.bbrc.2016.07.109"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27473657"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27473657"}]}]}]}
Synonyms ST7OT4, NCRNA00042
NCBI Gene ID 338069
API
Download Associations
Predicted Functions View ST7-OT4's ARCHS4 Predicted Functions.
Co-expressed Genes View ST7-OT4's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View ST7-OT4's ARCHS4 Predicted Functions.

Functional Associations

ST7-OT4 has 2,079 functional associations with biological entities spanning 5 categories (molecular profile, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 25 datasets.

Click the + buttons to view associations for ST7-OT4 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of ST7-OT4 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of ST7-OT4 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of ST7-OT4 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of ST7-OT4 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of ST7-OT4 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores diseases co-occuring with ST7-OT4 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at ST7-OT4 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of ST7-OT4 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of ST7-OT4 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of ST7-OT4 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of ST7-OT4 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of ST7-OT4 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of ST7-OT4 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of ST7-OT4 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
HPA Cell Line Gene Expression Profiles cell lines with high or low expression of ST7-OT4 gene relative to other cell lines from the HPA Cell Line Gene Expression Profiles dataset.
HPA Tissue Gene Expression Profiles tissues with high or low expression of ST7-OT4 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset.
HPA Tissue Protein Expression Profiles tissues with high or low expression of ST7-OT4 protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset.
HPA Tissue Sample Gene Expression Profiles tissue samples with high or low expression of ST7-OT4 gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of ST7-OT4 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of ST7-OT4 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of ST7-OT4 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of ST7-OT4 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue Gene Expression Profiles cell types and tissues with high or low expression of ST7-OT4 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue Gene Expression Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at ST7-OT4 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of ST7-OT4 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.