| Name | STN1 subunit of CST complex |
| Description | OBFC1 and C17ORF68 (MIM 613129) are subunits of an alpha accessory factor (AAF) that stimulates the activity of DNA polymerase-alpha-primase (see MIM 176636), the enzyme that initiates DNA replication (Casteel et al., 2009 [PubMed 19119139]). OBFC1 also appears to function in a telomere-associated complex with C17ORF68 and TEN1 (C17ORF106; MIM 613130) (Miyake et al., 2009 [PubMed 19854130]).[supplied by OMIM, Nov 2009] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nSTN1 is a critical component of the CST complex (comprising CTC1, STN1 and TEN1) that safeguards telomere integrity by binding single‐stranded DNA in a sequence‐independent manner. In mammalian cells, STN1‐containing CST associates with telomeres throughout the cell cycle to limit telomerase action, thereby ensuring that telomere extension is tightly regulated. CST acts in a manner reminiscent of replication protein A (RPA) by facilitating both proper replication of the telomere duplex and the crucial fill‐in synthesis of the C‐strand following telomerase-mediated G-strand extension. Such dual functions are evident from studies showing that reduction or loss of STN1 leads to aberrant single-stranded G-telomeric overhang accumulation, replication delays, and defects in C-strand synthesis, which ultimately compromise telomere length maintenance."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its role in normal telomere replication, STN1 is essential for resolving replication stress. Depletion of STN1 not only compromises telomere duplication but also impacts genome-wide replication restart. Such stress is manifested as delayed progression through telomeric regions, accumulation of fragile telomeres, and enhanced sensitivity to agents that stall replication forks. Additionally, STN1-containing CST helps counteract the presence of obstructive DNA secondary structures (such as G-quadruplexes) during lagging-strand synthesis and is involved in coordinating the recruitment of repair and fork restart factors, including RAD51. These activities prevent unscheduled nucleolytic degradation at stalled forks and promote the firing of dormant origins in response to replication stress."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "6", "end_ref": "10"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAt the biochemical level, STN1 contributes to the stimulation and organization of DNA polymerase-α–primase activity. Its N-terminal OB fold domain is primarily responsible for interacting with POLA2, a key subunit of the primase complex, thereby promoting the conformational changes necessary for efficient RNA-DNA primer synthesis. This regulatory interplay is crucial not only for initiating lagging-strand synthesis at telomeres but also for overall genome replication, reinforcing the concept that CST functions as an RPA-like molecular coordinator."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nRegulation of STN1 expression and its clinical importance further underscore its pivotal roles in maintaining genome stability. In budding yeast, STN1 levels are tightly controlled by translational mechanisms involving upstream overlapping open reading frames, a regulatory feature conserved in mammals that helps to fine-tune CST function. In humans, mutations in STN1 have been linked to telomeropathies such as Coats plus syndrome, where defective STN1 function leads to telomere dysfunction, genomic instability, and associated clinical phenotypes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yasuyuki Miyake, Mirai Nakamura, Akira Nabetani, et al. "}, {"type": "b", "children": [{"type": "t", "text": "RPA-like mammalian Ctc1-Stn1-Ten1 complex binds to single-stranded DNA and protects telomeres independently of the Pot1 pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molcel.2009.08.009"}], "href": "https://doi.org/10.1016/j.molcel.2009.08.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19854130"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19854130"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Liuh-Yow Chen, Sophie Redon, Joachim Lingner "}, {"type": "b", "children": [{"type": "t", "text": "The human CST complex is a terminator of telomerase activity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature11269"}], "href": "https://doi.org/10.1038/nature11269"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22763445"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22763445"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Feng Wang, Jason A Stewart, Christopher Kasbek, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Human CST has independent functions during telomere duplex replication and C-strand fill-in."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2012.10.007"}], "href": "https://doi.org/10.1016/j.celrep.2012.10.007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23142664"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23142664"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xuyang Feng, Shih-Jui Hsu, Christopher Kasbek, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CTC1-mediated C-strand fill-in is an essential step in telomere length maintenance."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkx125"}], "href": "https://doi.org/10.1093/nar/gkx125"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28334750"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28334750"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Arthur J Zaug, Karen J Goodrich, Jessica J Song, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Reconstitution of a telomeric replicon organized by CST."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41586-022-04930-8"}], "href": "https://doi.org/10.1038/s41586-022-04930-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35831508"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35831508"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Jason A Stewart, Feng Wang, Mary F Chaiken, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Human CST promotes telomere duplex replication and general replication restart after fork stalling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO J (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/emboj.2012.215"}], "href": "https://doi.org/10.1038/emboj.2012.215"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22863775"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22863775"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Chenhui Huang, Xueyu Dai, Weihang Chai "}, {"type": "b", "children": [{"type": "t", "text": "Human Stn1 protects telomere integrity by promoting efficient lagging-strand synthesis at telomeres and mediating C-strand fill-in."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Res (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/cr.2012.132"}], "href": "https://doi.org/10.1038/cr.2012.132"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22964711"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22964711"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Miaomiao Zhang, Bing Wang, Tingfang Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mammalian CST averts replication failure by preventing G-quadruplex accumulation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkz264"}], "href": "https://doi.org/10.1093/nar/gkz264"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30976812"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30976812"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Megan Chastain, Qing Zhou, Olga Shiva, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Human CST Facilitates Genome-wide RAD51 Recruitment to GC-Rich Repetitive Sequences in Response to Replication Stress."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2016.06.077"}], "href": "https://doi.org/10.1016/j.celrep.2016.06.077"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27487043"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27487043"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Rishi Kumar Jaiswal, Kai-Hang Lei, Megan Chastain, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CaMKK2 and CHK1 phosphorylate human STN1 in response to replication stress to protect stalled forks from aberrant resection."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-023-43685-2"}], "href": "https://doi.org/10.1038/s41467-023-43685-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38036565"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38036565"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Swapna Ganduri, Neal F Lue "}, {"type": "b", "children": [{"type": "t", "text": "STN1-POLA2 interaction provides a basis for primase-pol α stimulation by human STN1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkx621"}], "href": "https://doi.org/10.1093/nar/gkx621"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28934486"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28934486"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Qixiang He, Xiuhua Lin, Bianca L Chavez, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structures of the human CST-Polα-primase complex bound to telomere templates."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41586-022-05040-1"}], "href": "https://doi.org/10.1038/s41586-022-05040-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35830881"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35830881"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Victoria Torrance, David Lydall "}, {"type": "b", "children": [{"type": "t", "text": "Overlapping open reading frames strongly reduce human and yeast STN1 gene expression and affect telomere function."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Genet (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pgen.1007523"}], "href": "https://doi.org/10.1371/journal.pgen.1007523"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30067734"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30067734"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Gouri Rao Passi, Uzma Shamim, Surabhi Rathore, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An Indian child with Coats plus syndrome due to mutations in STN1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Med Genet A (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ajmg.a.61737"}], "href": "https://doi.org/10.1002/ajmg.a.61737"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32627942"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32627942"}]}]}]}
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| NCBI Gene ID | 79991 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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STN1 has 2,023 functional associations with biological entities spanning 6 categories (chemical, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 35 datasets.
Click the + buttons to view associations for STN1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of STN1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| Carcinogenome Chemical Perturbation Carcinogenicity Signatures | small molecule perturbations changing expression of STN1 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset. | |
| CCLE Cell Line Proteomics | Cell lines associated with STN1 protein from the CCLE Cell Line Proteomics dataset. | |
| ClinVar Gene-Phenotype Associations 2025 | phenotypes associated with STN1 gene from the curated ClinVar Gene-Phenotype Associations 2025 dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of STN1 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| CM4AI U2OS Cell Map Protein Localization Assemblies | assemblies containing STN1 protein from integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing STN1 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 | cellular components containing STN1 protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with STN1 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DeepCoverMOA Drug Mechanisms of Action | small molecule perturbations with high or low expression of STN1 protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset. | |
| DepMap CRISPR Gene Dependency | cell lines with fitness changed by STN1 gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset. | |
| DGIdb Drug Targets 2026 | interacting drugs for STN1 protein from the DGIdb Drug Targets 2026 dataset. | |
| DISEASES Curated Gene-Disease Association Evidence Scores 2025 | diseases involving STN1 gene from the DISEASES Curated Gene-Disease Association Evidence Scores 2025 dataset. | |
| DISEASES Experimental Gene-Disease Association Evidence Scores 2025 | diseases associated with STN1 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with STN1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving STN1 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing STN1 protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GO Molecular Function Annotations 2025 | molecular functions performed by STN1 gene from the curated GO Molecular Function Annotations 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of STN1 gene from the GTEx eQTL 2025 dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with STN1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of STN1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of STN1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles | drug perturbations changing expression of STN1 gene from the NIBR DRUG-seq U2OS MoA Box dataset. | |
| PFOCR Pathway Figure Associations 2023 | pathways involving STN1 protein from the PFOCR Pathway Figure Associations 2023 dataset. | |
| PFOCR Pathway Figure Associations 2024 | pathways involving STN1 protein from the Wikipathways PFOCR 2024 dataset. | |
| Reactome Pathways 2024 | pathways involving STN1 protein from the Reactome Pathways 2024 dataset. | |
| Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of STN1 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of STN1 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of STN1 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of STN1 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Sci-Plex Drug Perturbation Signatures | drug perturbations changing expression of STN1 gene from the Sci-Plex Drug Perturbation Signatures dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of STN1 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of STN1 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with STN1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |
| WikiPathways Pathways 2024 | pathways involving STN1 protein from the WikiPathways Pathways 2024 dataset. | |