| Name | TATA-box binding protein associated factor 11 like 2 |
| Description | Predicted to enable protein heterodimerization activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough the query requested information on TAF11L2, none of the provided abstracts mention or address TAF11L2. Instead, they focus on SLC4A10 (also known as NCBE or NBCn2), a Na⁺‐dependent, electroneutral bicarbonate transporter that plays a central role in neuronal pH regulation and cerebrospinal fluid (CSF) secretion. In neurons, SLC4A10 contributes to the uptake of HCO₃⁻ in exchange for Cl⁻ under a sodium gradient, thereby regulating intracellular pH and modulating synaptic excitability. In the choroid plexus epithelium, its basolateral localization supports the vectorial transport of Na⁺, which is critical for CSF production, and its disruption has been linked to collapsed brain ventricles and protective effects against induced seizures."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAt the molecular level, the studies demonstrate that SLC4A10 mediates Na⁺‐dependent HCO₃⁻ uptake with a distinctive stoichiometry that relies on Cl⁻ as the counterion, and that its transport activity is sensitive to inhibitors such as DIDS. Detailed mutagenesis and electrophysiological investigations reveal that key charged amino acids are required for proper function. In addition, alternative splicing produces multiple SLC4A10 variants with distinct N- and C-termini that confer tissue-specific expression patterns; variants predominating in the brain differ from those found in epithelial tissues such as the kidney or small intestine. Compensatory molecular adaptations following genetic disruption of SLC4A10—including altered expression and membrane targeting of related transporters like NHE1, Na⁺/K⁺-ATPase, and NBCe1—underscore its pivotal role in maintaining ion and pH homeostasis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "7", "end_ref": "13"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurthermore, genetic disruption or knockout of SLC4A10 in animal models has provided significant insights into its physiological importance. Loss of SLC4A10 leads to marked reductions of CSF secretion, altered properties of inhibitory synaptic transmission (with reduced GABA release), and even perturbed sensory functions such as vision and hearing. Investigations extend these findings to reveal that SLC4A10 (along with related SLC4 family members) may also support K⁺ transport under certain conditions, with recent molecular dynamics data suggesting that conserved residues coordinate multiple monovalent cations. Collectively, these observations underscore the multifaceted role of SLC4A10 in central nervous system development, neuronal excitability, and organ homeostasis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "14", "end_ref": "18"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "J Praetorius, L N Nejsum, S Nielsen "}, {"type": "b", "children": [{"type": "t", "text": "A SCL4A10 gene product maps selectively to the basolateral plasma membrane of choroid plexus epithelial cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Cell Physiol (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajpcell.00240.2003"}], "href": "https://doi.org/10.1152/ajpcell.00240.2003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14592810"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14592810"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "C A Hübner, M Hentschke, S Jacobs, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression of the sodium-driven chloride bicarbonate exchanger NCBE during prenatal mouse development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene Expr Patterns (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.modgep.2004.08.002"}], "href": "https://doi.org/10.1016/j.modgep.2004.08.002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15567717"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15567717"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Li-Ming Chen, Inyeong Choi, Gabriel G Haddad, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Chronic continuous hypoxia decreases the expression of SLC4A7 (NBCn1) and SLC4A10 (NCBE) in mouse brain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Regul Integr Comp Physiol (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajpregu.00497.2007"}], "href": "https://doi.org/10.1152/ajpregu.00497.2007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17928512"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17928512"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "L-M Chen, M L Kelly, J D Rojas, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Use of a new polyclonal antibody to study the distribution and glycosylation of the sodium-coupled bicarbonate transporter NCBE in rodent brain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuroscience (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuroscience.2007.10.015"}], "href": "https://doi.org/10.1016/j.neuroscience.2007.10.015"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18061361"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18061361"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Stefan Jacobs, Eva Ruusuvuori, Sampsa T Sipilä, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mice with targeted Slc4a10 gene disruption have small brain ventricles and show reduced neuronal excitability."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0705487105"}], "href": "https://doi.org/10.1073/pnas.0705487105"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18165320"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18165320"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Helle Hasager Damkier, Vikram Prasad, Christian Andreas Hübner, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Nhe1 is a luminal Na+/H+ exchanger in mouse choroid plexus and is targeted to the basolateral membrane in Ncbe/Nbcn2-null mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Cell Physiol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajpcell.00062.2009"}], "href": "https://doi.org/10.1152/ajpcell.00062.2009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19369449"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19369449"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Y Liu, K Xu, L M Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Distribution of NBCn2 (SLC4A10) splice variants in mouse brain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuroscience (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuroscience.2010.06.005"}], "href": "https://doi.org/10.1016/j.neuroscience.2010.06.005"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20541593"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20541593"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Helle Hasager Damkier, Christian Aalkjaer, Jeppe Praetorius "}, {"type": "b", "children": [{"type": "t", "text": "Na+-dependent HCO3- import by the slc4a10 gene product involves Cl- export."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M110.108712"}], "href": "https://doi.org/10.1074/jbc.M110.108712"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20566632"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20566632"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Ying Liu, Jiu-Ying Xu, Deng-Ke Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression and distribution of NBCn2 (Slc4a10) splice variants in mouse brain: cloning of novel variant NBCn2-D."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Brain Res (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.brainres.2011.03.046"}], "href": "https://doi.org/10.1016/j.brainres.2011.03.046"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21439947"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21439947"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Helle Hasager Damkier, Jeppe Praetorius "}, {"type": "b", "children": [{"type": "t", "text": "Genetic ablation of Slc4a10 alters the expression pattern of transporters involved in solute movement in the mouse choroid plexus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Cell Physiol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajpcell.00285.2011"}], "href": "https://doi.org/10.1152/ajpcell.00285.2011"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22357733"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22357733"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Gerrit Hilgen, Antje K Huebner, Naoyuki Tanimoto, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Lack of the sodium-driven chloride bicarbonate exchanger NCBE impairs visual function in the mouse retina."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0046155"}], "href": "https://doi.org/10.1371/journal.pone.0046155"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23056253"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23056253"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Ying Liu, Deng-Ke Wang, De-Zhi Jiang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cloning and functional characterization of novel variants and tissue-specific expression of alternative amino and carboxyl termini of products of slc4a10."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0055974"}], "href": "https://doi.org/10.1371/journal.pone.0055974"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23409100"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23409100"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Xiaohong Song, Miwako Yamasaki, Taisuke Miyazaki, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Neuron type- and input pathway-dependent expression of Slc4a10 in adult mouse brains."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Neurosci (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/ejn.12636"}], "href": "https://doi.org/10.1111/ejn.12636"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24905082"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24905082"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Antje K Huebner, Hannes Maier, Alena Maul, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Early Hearing Loss upon Disruption of Slc4a10 in C57BL/6 Mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Assoc Res Otolaryngol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10162-019-00719-1"}], "href": "https://doi.org/10.1007/s10162-019-00719-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31001720"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31001720"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "James Fasham, Antje K Huebner, Lutz Liebmann, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SLC4A10 mutation causes a neurological disorder associated with impaired GABAergic transmission."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Brain (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/brain/awad235"}], "href": "https://doi.org/10.1093/brain/awad235"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37459438"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37459438"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Laura Øllegaard Johnsen, Kathrine Abildskov Friis, Helle Hasager Damkier "}, {"type": "b", "children": [{"type": "t", "text": "In vitro investigation of the effect of proinflammatory cytokines on mouse choroid plexus membrane transporters Ncbe and NKCC1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Fluids Barriers CNS (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12987-023-00474-9"}], "href": "https://doi.org/10.1186/s12987-023-00474-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37828581"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37828581"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Reza Maroofian, Mina Zamani, Rauan Kaiyrzhanov, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Biallelic variants in SLC4A10 encoding a sodium-dependent bicarbonate transporter lead to a neurodevelopmental disorder."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genet Med (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.gim.2023.101034"}], "href": "https://doi.org/10.1016/j.gim.2023.101034"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38054405"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38054405"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Gaspar Peña-Münzenmayer, Alvin T George, Nuria Llontop, et al. "}, {"type": "b", "children": [{"type": "t", "text": "K"}, {"type": "a", "children": [{"type": "t", "text": "sup"}], "href": "sup"}, {"type": "t", "text": "+"}, {"type": "a", "children": [{"type": "t", "text": "/sup"}], "href": "/sup"}, {"type": "t", "text": "-Driven Cl"}, {"type": "a", "children": [{"type": "t", "text": "sup"}], "href": "sup"}, {"type": "t", "text": "-"}, {"type": "a", "children": [{"type": "t", "text": "/sup"}], "href": "/sup"}, {"type": "t", "text": "/HCO"}, {"type": "a", "children": [{"type": "t", "text": "sub"}], "href": "sub"}, {"type": "t", "text": "3"}, {"type": "a", "children": [{"type": "t", "text": "/sub"}], "href": "/sub"}, {"type": "a", "children": [{"type": "t", "text": "sup"}], "href": "sup"}, {"type": "t", "text": "-"}, {"type": "a", "children": [{"type": "t", "text": "/sup"}], "href": "/sup"}, {"type": "t", "text": " Exchange Mediated by Slc4a8 and Slc4a10."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms25084575"}], "href": "https://doi.org/10.3390/ijms25084575"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38674160"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38674160"}]}]}]}
|
| NCBI Gene ID | 391742 |
| API | |
| Download Associations | |
| Predicted Functions |
![]() |
| Co-expressed Genes |
![]() |
| Expression in Tissues and Cell Lines |
![]() |
TAF11L2 has 86 functional associations with biological entities spanning 4 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, gene, protein or microRNA) extracted from 8 datasets.
Click the + buttons to view associations for TAF11L2 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing TAF11L2 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with TAF11L2 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with TAF11L2 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving TAF11L2 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing TAF11L2 protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of TAF11L2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of TAF11L2 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of TAF11L2 gene from the RummaGEO Drug Perturbation Signatures dataset. | |