| Name | TAFA chemokine like family member 1 |
| Description | This gene is a member of the TAFA family which is composed of five highly homologous genes that encode small secreted proteins. These proteins contain conserved cysteine residues at fixed positions, and are distantly related to MIP-1alpha, a member of the CC-chemokine family. The TAFA proteins are predominantly expressed in specific regions of the brain, and are postulated to function as brain-specific chemokines or neurokines that act as regulators of immune and nervous cells. [provided by RefSeq, Jul 2008] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe secreted protein TAFA1 appears to modulate intracellular membrane dynamics by impacting key trafficking events. In several studies, a small GTPase with similar functional characteristics has been shown to regulate the positioning of intracellular organelles. For example, one investigation demonstrated that active forms of this GTPase orchestrate the repositioning of lysosomes from the cell periphery toward the Golgi region, a process mediated by its membrane attachment and direct interaction with specific lysosome‐associated effectors."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "In parallel, functions related to membrane remodeling have been described. The protein enhances the formation of macropinosomes from actin‐rich membrane ruffles, acting together with factors such as Rac1 and WAVE2, thereby facilitating uptake of extracellular material and contributing to efficient endocytic trafficking."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "A further recurrent theme is the role in ciliary assembly and signaling. Experimental evidence shows that this regulator is critical for the initial steps of intracellular ciliogenesis. It mediates the formation of the ciliary vesicle at the mother centriole, a process that is dependent on its GTP binding and turnover activity and that ultimately impacts Hedgehog pathway responsiveness and neural cell fate decisions."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "5"}]}, {"type": "t", "text": "Additionally, the protein contributes to the maturation of phagosomes into phagolysosomes—a process essential for innate immunity. It aids in the fusion of phagosomes with late endosomal/lysosomal compartments by recruiting effector partners (for instance, Munc13‑2), which is critical for effective microbial killing, including against mycobacterial pathogens."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "Complementary studies in diverse cell types, including macrophages, further support a role in regulating lysosome positioning and highlight its contribution to proper Hedgehog signal modulation in developmental contexts. It is noteworthy, however, that other research—examining genetic risk factors for cataracts in type 2 diabetes and androgen receptor dynamics in Sertoli cells—addresses separate biological pathways. These investigations underscore the broad cellular impact of vesicular trafficking regulators while not directly implicating TAFA1 in those contexts."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "7", "end_ref": "10"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Peng Sun, Hironobu Yamamoto, Shiro Suetsugu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Small GTPase Rah/Rab34 is associated with membrane ruffles and macropinosomes and promotes macropinosome formation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M208699200"}], "href": "https://doi.org/10.1074/jbc.M208699200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12446704"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12446704"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Tuanlao Wang, Wanjin Hong "}, {"type": "b", "children": [{"type": "t", "text": "Interorganellar regulation of lysosome positioning by the Golgi apparatus through Rab34 interaction with Rab-interacting lysosomal protein."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.e02-05-0280"}], "href": "https://doi.org/10.1091/mbc.e02-05-0280"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12475955"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12475955"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Anil Kumar Ganga, Margaret C Kennedy, Mai E Oguchi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Rab34 GTPase mediates ciliary membrane formation in the intracellular ciliogenesis pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Curr Biol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cub.2021.04.075"}], "href": "https://doi.org/10.1016/j.cub.2021.04.075"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33989527"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33989527"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Shouying Xu, Yang Liu, Qing Meng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Rab34 small GTPase is required for Hedgehog signaling and an early step of ciliary vesicle formation in mouse."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Sci (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/jcs.213710"}], "href": "https://doi.org/10.1242/jcs.213710"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30301781"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30301781"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Michael W Stuck, Weng Man Chong, Jung-Chi Liao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Rab34 is necessary for early stages of intracellular ciliogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Curr Biol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cub.2021.04.018"}], "href": "https://doi.org/10.1016/j.cub.2021.04.018"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33989524"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33989524"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Bahram Kasmapour, Achim Gronow, Christopher K E Bleck, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Size-dependent mechanism of cargo sorting during lysosome-phagosome fusion is controlled by Rab34."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1206811109"}], "href": "https://doi.org/10.1073/pnas.1206811109"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23197834"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23197834"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Bahram Kasmapour, Liang Cai, Maximiliano Gabriel Gutierrez "}, {"type": "b", "children": [{"type": "t", "text": "Spatial distribution of phagolysosomes is independent of the regulation of lysosome position by Rab34."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Biochem Cell Biol (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biocel.2013.07.003"}], "href": "https://doi.org/10.1016/j.biocel.2013.07.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23871933"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23871933"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Ganesh V Pusapati, Jennifer H Kong, Bhaven B Patel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CRISPR Screens Uncover Genes that Regulate Target Cell Sensitivity to the Morphogen Sonic Hedgehog."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Cell (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.devcel.2017.12.003"}], "href": "https://doi.org/10.1016/j.devcel.2017.12.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29290584"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29290584"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Hui-Ju Lin, Yu-Chuen Huang, Jane-Ming Lin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Single-nucleotide polymorphisms in chromosome 3p14.1- 3p14.2 are associated with susceptibility of type 2 diabetes with cataract."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Vis (2010)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20664687"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20664687"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Qiong Deng, Chihua He, Yong Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CSN6 and Rab34 Are Involved in Androgen Receptor Trafficking in Mouse Testicular Sertoli Cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Physiol Biochem (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1159/000491608"}], "href": "https://doi.org/10.1159/000491608"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29991022"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29991022"}]}]}]}
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| NCBI Gene ID | 407738 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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TAFA1 has 936 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 24 datasets.
Click the + buttons to view associations for TAFA1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of TAFA1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with TAFA1 gene from the CellMarker Gene-Cell Type Associations dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of TAFA1 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing TAFA1 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with TAFA1 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with TAFA1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving TAFA1 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Molecular Function Annotations 2025 | molecular functions performed by TAFA1 gene from the curated GO Molecular Function Annotations 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of TAFA1 gene from the GTEx eQTL 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of TAFA1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with TAFA1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| HuBMAP ASCT+B Annotations | cell types associated with TAFA1 gene from the HuBMAP ASCT+B dataset. | |
| HuBMAP ASCT+B Augmented with RNA-seq Coexpression | cell types associated with TAFA1 gene from the HuBMAP ASCT+B Augmented with RNA-seq Coexpression dataset. | |
| HuBMAP Azimuth Cell Type Annotations | cell types associated with TAFA1 gene from the HuBMAP Azimuth Cell Type Annotations dataset. | |
| IMPC Knockout Mouse Phenotypes | phenotypes of mice caused by TAFA1 gene knockout from the IMPC Knockout Mouse Phenotypes dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of TAFA1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of TAFA1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| PFOCR Pathway Figure Associations 2024 | pathways involving TAFA1 protein from the Wikipathways PFOCR 2024 dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of TAFA1 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of TAFA1 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of TAFA1 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of TAFA1 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of TAFA1 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with TAFA1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |