TBC1D3I Gene

Name TBC1 domain family member 3I
Description Predicted to enable GTPase activator activity. Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent studies have implicated a conserved nuclear protein, Kin17, in safeguarding genomic integrity. Kin17 is up-regulated in response to genotoxic stress, where it binds DNA and RNA—including a preference for poly(G) and poly(U) sequences—and is integrated into the spliceosome, hinting at important roles in RNA processing and nuclear metabolism. In addition, Kin17 is essential for the timely repair of DNA double-stranded breaks that arise either from endogenous (activation‐induced deaminase) or exogenous (ionizing radiation) insults, with reduced Kin17 function leading to elevated deletion frequencies during class switch recombination in B cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn parallel, investigations into the Von Willebrand A domain-containing protein 8 (VWA8) have revealed its localization to mitochondria and its classification as an AAA ATPase. VWA8 exists in at least two splice variants—a full-length version and a truncated isoform—and harbors a mitochondrial targeting sequence necessary for its exclusive mitochondrial localization. Biochemical studies demonstrate that VWA8 possesses ATPase activity that is critically dependent on its Walker A and Walker B motifs, and its expression is elevated in tissues such as liver in response to high-fat feeding."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFunctional ablation of VWA8 in hepatocytes provokes a cascade of compensatory changes, including increased mitochondrial and peroxisomal oxidative capacity, heightened reactive oxygen species production, and an up-regulation of hepatocyte nuclear factor 4α. This evidence supports the notion that VWA8 plays a key role in mitochondrial protein quality control and metabolic homeostasis, with its loss triggering responses aimed at counteracting oxidative stress. Together, these studies underscore a dual cellular strategy wherein nuclear factors such as Kin17 ensure genomic and RNA integrity, while mitochondrial regulators like VWA8 maintain bioenergetic and proteostatic balance."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ghislaine Pinon-Lataillade, Christel Masson, Jacqueline Bernardino-Sgherri, et al. "}, {"type": "b", "children": [{"type": "t", "text": "KIN17 encodes an RNA-binding protein and is expressed during mouse spermatogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Sci (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/jcs.01226"}], "href": "https://doi.org/10.1242/jcs.01226"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15252136"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15252136"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Michael X Le, Dania Haddad, Alexanda K Ling, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Kin17 facilitates multiple double-strand break repair pathways that govern B cell class switching."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep37215"}], "href": "https://doi.org/10.1038/srep37215"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27853268"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27853268"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Moulun Luo, April E Mengos, Wuqiong Ma, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Characterization of the novel protein KIAA0564 (Von Willebrand Domain-containing Protein 8)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2017.04.067"}], "href": "https://doi.org/10.1016/j.bbrc.2017.04.067"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28414126"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28414126"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Brian S Grewe, Janet E Richmond, David E Featherstone "}, {"type": "b", "children": [{"type": "t", "text": "The spatial and developmental expression of mouse Vwa8 (von Willebrand domain-containing protein 8)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene Expr Patterns (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.gep.2018.04.004"}], "href": "https://doi.org/10.1016/j.gep.2018.04.004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29660410"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29660410"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Moulun Luo, Wayne T Willis, Dawn K Coletta, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Deletion of the Mitochondrial Protein VWA8 Induces Oxidative Stress and an HNF4α Compensatory Response in Hepatocytes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochemistry (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1021/acs.biochem.9b00863"}], "href": "https://doi.org/10.1021/acs.biochem.9b00863"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31702900"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31702900"}]}]}]}
NCBI Gene ID 102724862
API
Download Associations
Predicted Functions View TBC1D3I's ARCHS4 Predicted Functions.
Co-expressed Genes View TBC1D3I's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View TBC1D3I's ARCHS4 Predicted Functions.

Functional Associations

TBC1D3I has 869 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 15 datasets.

Click the + buttons to view associations for TBC1D3I from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of TBC1D3I gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of TBC1D3I gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing TBC1D3I protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with TBC1D3I protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
GO Biological Process Annotations 2025 biological processes involving TBC1D3I gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2025 cellular components containing TBC1D3I protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by TBC1D3I gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of TBC1D3I gene from the GTEx eQTL 2025 dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with TBC1D3I gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of TBC1D3I gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of TBC1D3I gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of TBC1D3I gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of TBC1D3I gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of TBC1D3I protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with TBC1D3I protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.