THUMPD3-AS1 Gene

Name THUMPD3 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nLong noncoding RNAs have emerged as pivotal regulators in a variety of pathological conditions. In osteoarthritis, THUMPD3‑AS1, also known as THUMPD3 antisense RNA 1, has been implicated in modulating disease development though its precise mechanisms remain under investigation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In parallel, studies in colorectal cancer have employed ceRNA network analyses to elucidate how noncoding RNAs contribute to tumorigenesis, highlighting the broader relevance of ceRNA-mediated regulation in malignancies."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn gastric cancer, THUMPD3‑AS1 expression is significantly reduced in tumor tissues compared with normal counterparts. Downregulation of THUMPD3‑AS1 is associated with advanced TNM stage, lymphatic and vascular infiltration, and poorer overall survival. Functionally, overexpression of THUMPD3‑AS1 inhibits cell proliferation, migration, and invasion, and reduces reactive oxygen species accumulation by modulating the miR‑1252‑3p/CXCL17 axis, thereby suggesting a tumor‐suppressive role in this context."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nConversely, in ovarian cancer, THUMPD3‑AS1 acts as an oncogenic long noncoding RNA. It is highly expressed in ovarian cancer cells where it functions as a molecular sponge for miR‑320d, preventing miRNA‑mediated degradation of ARF1. The consequent upregulation of ARF1 is linked to enhanced cell viability and reduced apoptosis, underscoring a role for THUMPD3‑AS1 in promoting malignant progression in ovarian cancer."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yingjie Wang, Tian Li, Qi Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA THUMPD3-AS1 enhances the proliferation and inflammatory response of chondrocytes in osteoarthritis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int Immunopharmacol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.intimp.2021.108138"}], "href": "https://doi.org/10.1016/j.intimp.2021.108138"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34509934"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34509934"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yuwei Pu, Jinrong Wei, Yong Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "THUMPD3-AS1 facilitates cell growth and aggressiveness by the miR-218-5p/SKAP1 axis in colorectal cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Biochem Biophys (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12013-022-01074-4"}], "href": "https://doi.org/10.1007/s12013-022-01074-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35538197"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35538197"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yuwei Tan, Liang Liu, Xuemei Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "THUMPD3-AS1 Is Correlated with Gastric Cancer and Regulates Cell Function through miR-1252-3p and CXCL17."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Crit Rev Eukaryot Gene Expr (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1615/CritRevEukaryotGeneExpr.2022042848"}], "href": "https://doi.org/10.1615/CritRevEukaryotGeneExpr.2022042848"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36017917"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36017917"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Qingling Mu, Xin Wang, Kui Huang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "THUMPD3-AS1 inhibits ovarian cancer cell apoptosis through the miR-320d/ARF1 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FASEB J (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1096/fj.202302475RRR"}], "href": "https://doi.org/10.1096/fj.202302475RRR"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38963337"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38963337"}]}]}]}
Synonyms SETD5-AS1
NCBI Gene ID 440944
API
Download Associations
Predicted Functions View THUMPD3-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View THUMPD3-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View THUMPD3-AS1's ARCHS4 Predicted Functions.

Functional Associations

THUMPD3-AS1 has 1,066 functional associations with biological entities spanning 4 categories (chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 12 datasets.

Click the + buttons to view associations for THUMPD3-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of THUMPD3-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with THUMPD3-AS1 gene from the CellMarker Gene-Cell Type Associations dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of THUMPD3-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of THUMPD3-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of THUMPD3-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of THUMPD3-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of THUMPD3-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of THUMPD3-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of THUMPD3-AS1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of THUMPD3-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of THUMPD3-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by THUMPD3-AS1 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.