| Name | TIPARP antisense RNA 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent studies have revealed that the long noncoding RNA, referred to in these works as TIPARP‐AS1 (though originally described as a novel lncRNA or LINC00886), functions predominantly as a tumor suppressor. In laryngeal squamous cell carcinoma, this lncRNA appears to be epigenetically regulated, with DNA methylation and histone modifications contributing to its transcriptional inactivation, which may promote tumor formation and progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn esophageal squamous cell carcinoma, down‐regulation of this lncRNA due to promoter hypermethylation and associated histone modifications leads to diminished expression, thereby facilitating malignant transformation. Mechanistically, the lncRNA interferes with cellular proliferation, migration, and invasion, and it participates in the epithelial–mesenchymal transition process by regulating key EMT-related genes. It has been shown to interact with chromatin regulators such as SIRT7 to modify histone acetylation on the promoters of downstream targets like ELF3, which in turn modulates the expression of transcription factors (ZEB1 and ZEB2) and microRNA signals (miR-144) that are critical for maintaining the epithelial phenotype."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nSimilarly, in anaplastic thyroid cancer, decreased expression of this lncRNA is associated with dedifferentiation and enhanced tumor malignancy. Functional studies have demonstrated that the lncRNA interacts physically with protein kinase R (PKR), stabilizing it and influencing its degradation via the ubiquitin/proteasome pathway. This interaction indirectly modulates the activity of the eukaryotic initiation factor 2α (eIF2α), leading to alterations in protein synthesis that favor cancer cell proliferation and invasion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Lili Lan, Huan Cao, Weiwei Chi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Aberrant DNA hypermethylation-silenced LINC00886 gene accelerates malignant progression of laryngeal carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pathol Res Pract (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.prp.2020.152877"}], "href": "https://doi.org/10.1016/j.prp.2020.152877"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32111441"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32111441"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Zhiming Dong, Liu Yang, Juntao Lu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Downregulation of LINC00886 facilitates epithelial-mesenchymal transition through SIRT7/ELF3/miR-144 pathway in esophageal squamous cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Exp Metastasis (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10585-022-10171-w"}], "href": "https://doi.org/10.1007/s10585-022-10171-w"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35616822"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35616822"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Ben Ma, Yi Luo, Weibo Xu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00886 Negatively Regulates Malignancy in Anaplastic Thyroid Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Endocrinology (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/endocr/bqac204"}], "href": "https://doi.org/10.1210/endocr/bqac204"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36726346"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36726346"}]}]}]}
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| NCBI Gene ID | 100287227 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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TIPARP-AS1 has 2,050 functional associations with biological entities spanning 5 categories (molecular profile, organism, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.
Click the + buttons to view associations for TIPARP-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of TIPARP-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of TIPARP-AS1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with TIPARP-AS1 gene from the CellMarker Gene-Cell Type Associations dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of TIPARP-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at TIPARP-AS1 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of TIPARP-AS1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of TIPARP-AS1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of TIPARP-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of TIPARP-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of TIPARP-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of TIPARP-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of TIPARP-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of TIPARP-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of TIPARP-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of TIPARP-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at TIPARP-AS1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |