TLX1NB Gene

Name TLX1 neighbor
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent studies have identified critical regulators of cell survival and stress responses. In murine models exposed to ionizing radiation, an active recombinant human MnSOD was shown to protect normal tissues and, at the same time, sensitize tumor cells by activating antiapoptotic factors such as AVEN, while studies in the mouse testis have revealed alternative transcript variants of the AVEN gene linked to germ cell maturation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn a separate context, myocardial infarction has been associated with global 3′ untranslated region lengthening of key genes. Notably, alternative polyadenylation of the apoptotic repressor gene AVEN generates additional microRNA binding sites that lead to its downregulation, thereby exacerbating cardiomyocyte apoptosis and contributing to heart failure."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nDistinct from these regulatory mechanisms, the long noncoding RNA TLX1NB—located adjacent to the T cell leukemia homeobox 1 gene—has emerged as an oncogenic driver in colorectal cancer. TLX1NB is markedly up‐regulated in colon cancer tissues and correlates with advanced nodal stages. Functional experiments demonstrated that overexpression of TLX1NB enhances colon cancer cell migration, invasion, and pulmonary metastasis by promoting STAT5A phosphorylation, concurrently modulating epithelial and mesenchymal marker expression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Antonella Borrelli, Antonella Schiattarella, Roberto Mancini, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A recombinant MnSOD is radioprotective for normal cells and radiosensitizing for tumor cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Free Radic Biol Med (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.freeradbiomed.2008.10.030"}], "href": "https://doi.org/10.1016/j.freeradbiomed.2008.10.030"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18996183"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18996183"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Sawako Ina, Naoki Tsunekawa, Aya Nakamura, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression of the mouse Aven gene during spermatogenesis, analyzed by subtraction screening using Mvh-knockout mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene Expr Patterns (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s1567-133x(03)00111-x"}], "href": "https://doi.org/10.1016/s1567-133x(03"}, {"type": "t", "text": "00111-x) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12971998"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12971998"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Peng Yu, Shuai Song, Xiaokai Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Downregulation of apoptotic repressor "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "AVEN"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " exacerbates cardiac injury after myocardial infarction."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.2302482120"}], "href": "https://doi.org/10.1073/pnas.2302482120"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37816050"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37816050"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Guanyang Chen, Dongbo Lian, Lei Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The long non-coding RNA T cell leukemia homeobox 1 neighbor enhances signal transducer and activator of transcription 5A phosphorylation to promote colon cancer cell invasion, migration, and metastasis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2022.2068781"}], "href": "https://doi.org/10.1080/21655979.2022.2068781"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35502613"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35502613"}]}]}]}
Synonyms TDI, TD1, APT-B7
Proteins TLXNB_HUMAN
NCBI Gene ID 100038246
API
Download Associations
Predicted Functions View TLX1NB's ARCHS4 Predicted Functions.
Co-expressed Genes View TLX1NB's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View TLX1NB's ARCHS4 Predicted Functions.

Functional Associations

TLX1NB has 712 functional associations with biological entities spanning 5 categories (molecular profile, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 21 datasets.

Click the + buttons to view associations for TLX1NB from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of TLX1NB gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of TLX1NB gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of TLX1NB gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of TLX1NB gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of TLX1NB gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at TLX1NB gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of TLX1NB gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of TLX1NB gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing TLX1NB from the GeneSigDB Published Gene Signatures dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of TLX1NB gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWASdb SNP-Disease Associations diseases associated with TLX1NB gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with TLX1NB gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of TLX1NB gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of TLX1NB gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of TLX1NB gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of TLX1NB gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of TLX1NB gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at TLX1NB gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TargetScan Predicted Conserved microRNA Targets microRNAs regulating expression of TLX1NB gene predicted using conserved miRNA seed sequences from the TargetScan Predicted Conserved microRNA Targets dataset.
TargetScan Predicted Nonconserved microRNA Targets microRNAs regulating expression of TLX1NB gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of TLX1NB gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.