TMEM72-AS1 Gene

Name TMEM72 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nTax1 binding protein 3 (Tax1bp3)—also referred to as TIP1 in some contexts—is implicated in regulating cell fate and tissue response according to the studies provided. In one study, Tax1bp3 was shown to be expressed in bone and mesenchymal progenitor cells, where its levels increase as these cells are driven toward osteoblast and adipocyte lineages. Functional analyses revealed that increased Tax1bp3 suppresses osteogenic differentiation while concomitantly enhancing adipogenic differentiation. Mechanistically, these effects are mediated by inhibition of the canonical Wnt/β-catenin and BMP/Smads signaling pathways, processes that are crucial for proper skeletal development and homeostasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn a separate investigation addressing ischemia-reperfusion (I/R) injury in renal models, Tax1bp3 (referred to as Tip1) was found to be upregulated in vivo following I/R treatment. Additionally, when examined alongside Birc3—a gene whose upregulation appears to be protective against I/R-induced apoptosis—the data imply that Tip1 may participate in the complex regulatory networks that modulate tissue injury responses. Although in vitro findings (using oxygen-glucose deprivation/reoxygenation) showed a differing pattern for Tip1 compared with in vivo results, the overall trend underscores a stress-responsive role for this protein in the kidney."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIt should be noted that while the request mentioned TMEM72‑AS1, the abstracts provided do not directly address this transcript but rather focus on Tax1bp3/Tip1. If TMEM72‑AS1 is functionally related or lies within the same regulatory network, one might speculate on a potential role in modulating differentiation or injury responses through similar mechanisms. However, based solely on the above studies, the evidence supports a model in which Tax1bp3 acts as a pivotal mediator that reciprocally controls osteogenic and adipogenic differentiation in mesenchymal progenitor cells and is associated with alterations in cellular responses during renal I/R injury."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yi Wang, Ying Gan, Yuan Dong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Tax1 binding protein 3 regulates osteogenic and adipogenic differentiation through inactivating Wnt/β-catenin signalling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.17702"}], "href": "https://doi.org/10.1111/jcmm.17702"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36892460"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36892460"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Sixu Wang, Meishan Zhao, Xiaofei Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Birc3 and Tip1 are upregulated in renal ischemia reperfusion injury."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.gene.2023.147492"}], "href": "https://doi.org/10.1016/j.gene.2023.147492"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37209886"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37209886"}]}]}]}
NCBI Gene ID 220980
API
Download Associations
Predicted Functions View TMEM72-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View TMEM72-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View TMEM72-AS1's ARCHS4 Predicted Functions.

Functional Associations

TMEM72-AS1 has 1,516 functional associations with biological entities spanning 4 categories (molecular profile, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 17 datasets.

Click the + buttons to view associations for TMEM72-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of TMEM72-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of TMEM72-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of TMEM72-AS1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of TMEM72-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at TMEM72-AS1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of TMEM72-AS1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of TMEM72-AS1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of TMEM72-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of TMEM72-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of TMEM72-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with TMEM72-AS1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
GWASdb SNP-Disease Associations diseases associated with TMEM72-AS1 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with TMEM72-AS1 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of TMEM72-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of TMEM72-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of TMEM72-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at TMEM72-AS1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.