TMPO-AS1 Gene

Name TMPO antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nTMPO‐AS1 is an oncogenic long noncoding RNA that is aberrantly overexpressed in a wide range of malignancies—including breast cancer, non–small cell lung cancer (NSCLC), colorectal, ovarian, esophageal, osteosarcoma, retinoblastoma, cholangiocarcinoma, and bladder cancer—and is frequently associated with poor clinical prognosis. In estrogen receptor–positive breast cancer, for example, TMPO‐AS1 is induced by estrogen and promotes cell proliferation and endocrine therapy resistance by stabilizing ESR1 mRNA, whereas in NSCLC it is concomitantly overexpressed with its sense transcript TMPO, enhancing TMPO mRNA stability via antisense pairing. Comprehensive analyses have underscored its widespread oncogenic functions and its correlation with unfavorable patient outcomes."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMechanistically, TMPO‐AS1 exerts its oncogenic role by functioning as a competing endogenous RNA that sequesters several tumor‐suppressive microRNAs, thereby derepressing downstream oncogenes and key proliferative pathways. For instance, in osteosarcoma TMPO‐AS1 sponges miR‐199a‐5p to upregulate WNT7B and activate the Wnt/β‐catenin pathway"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ", while in ovarian cancer it prevents miR‐200c–mediated inhibition of TMEFF2, leading to PI3K/Akt pathway activation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " In lung and colorectal cancers, TMPO‐AS1 sequesters miR‐143‐3p, which results in the upregulation of cell cycle regulators such as CDK1."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " Moreover, it can interact with transcription regulators—binding to FUS and recruiting p300 to the TMPO promoter in esophageal squamous cell carcinoma, and associating with E2F6 to enhance LCN2 transcription in ovarian cancer."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}, {"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurther expanding its functional repertoire, TMPO‐AS1 also modulates key oncogenic and hypoxia–responsive pathways in other tumor types. In retinoblastoma, it regulates the expression of hypoxia–inducible factor–1α"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": ", and in cholangiocarcinoma it sponges let‐7g–5p to increase HMGA1 expression, promoting cell proliferation and migration."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": " Its oncogenic influence is further observed in bladder cancer and colorectal cancer, where TMPO‐AS1 knockdown suppresses cell proliferation, migration, and invasion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": " Notably, emerging evidence even implicates TMPO‐AS1 in benign ovary disorders such as polycystic ovary syndrome, thereby broadening its functional spectrum."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "15"}]}, {"type": "t", "text": " Collectively, these findings highlight TMPO‐AS1 as a multifunctional regulator that modulates mRNA stability, acts as a molecular sponge for various microRNAs, and enlists transcriptional co‐activators to facilitate tumorigenesis and chemoresistance."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "16"}, {"type": "fg_fs", "start_ref": "13", "end_ref": "15"}, {"type": "fg_f", "ref": "12"}, {"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Zhiming Qin, Xiangru Zheng, Yu Fang "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA TMPO-AS1 promotes progression of non-small cell lung cancer through regulating its natural antisense transcript TMPO."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2019.06.088"}], "href": "https://doi.org/10.1016/j.bbrc.2019.06.088"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31230752"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31230752"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yuichi Mitobe, Kazuhiro Ikeda, Takashi Suzuki, et al. 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NCBI Gene ID 100128191
API
Download Associations
Predicted Functions View TMPO-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View TMPO-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View TMPO-AS1's ARCHS4 Predicted Functions.

Functional Associations

TMPO-AS1 has 829 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 12 datasets.

Click the + buttons to view associations for TMPO-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of TMPO-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of TMPO-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of TMPO-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of TMPO-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of TMPO-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of TMPO-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of TMPO-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of TMPO-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of TMPO-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of TMPO-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of TMPO-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of TMPO-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.