TMT1A Gene

Name thiol methyltransferase 1A
Description Enables mRNA m(6)A methyltransferase activity and thiol S-methyltransferase activity. Involved in lncRNA processing; odontogenesis; and osteoblast differentiation. Located in endoplasmic reticulum and lipid droplet. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nIn thyroid cancer, METTL7A exhibits an intriguing epigenetic regulation mechanism. A study showed that a reduction in gene‐body (intragenic) methylation of METTL7A in thyroid cancer cells, compared to normal thyroid cells, alters its transcription. Mutation of a specific CpG site within the gene body resulted in enhanced RNA polymerase II recruitment and diminished binding of methyl-CpG binding protein-2; additionally, EZH2, a subunit of the polycomb repressor complex 2, may guide this methylation process."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the human cerebellum, METTL7A is predominantly localized in GFAP-positive cells, particularly within the end-feet of Bergmann glia at the cerebrospinal fluid-brain parenchyma barrier. Its presence at the contacts between Bergmann glia and Purkinje neurons, as well as in lipid droplets in white matter, suggests a potential role in maintaining cerebellar homeostasis and modulating synaptic activity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn malignancies such as melanoma, downregulation of METTL7A correlates with a more aggressive tumor phenotype, including increased proliferation, invasion, migration, and colony formation. Mechanistic investigations have linked this tumorigenic behavior to inhibition of the p53 signaling pathway, and low METTL7A expression is further associated with reduced immune cell infiltration and less favorable responses to chemotherapy and immunotherapy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMoreover, METTL7A, together with its paralog METTL7B, plays an important role in drug resistance. Specifically, these methyltransferases can methylate the thiol group present in thiol-based histone deacetylase inhibitors (HDACis), such as romidepsin. This methylation inactivates the zinc-binding moiety of the drugs, thereby conferring a selective resistance to these HDACis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Shasha Zhou, Yihang Shen, Min Zheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "DNA methylation of METTL7A gene body regulates its transcriptional level in thyroid cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.16147"}], "href": "https://doi.org/10.18632/oncotarget.16147"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28416772"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28416772"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "América Vera-Montecinos, Jordi Galiano-Landeira, Mònica Roldán, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A Novel Localization of METTL7A in Bergmann Glial Cells in Human Cerebellum."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms24098405"}], "href": "https://doi.org/10.3390/ijms24098405"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37176112"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37176112"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Duoli Zhang, Tao Zou, Qingsong Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcriptomic characterization revealed that METTL7A inhibits melanoma progression via the p53 signaling pathway and immunomodulatory pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PeerJ (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7717/peerj.15799"}], "href": "https://doi.org/10.7717/peerj.15799"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37547717"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37547717"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Robert W Robey, Christina M Fitzsimmons, Wilfried M Guiblet, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Methyltransferases METTL7A and METTL7B Confer Resistance to Thiol-Based Histone Deacetylase Inhibitors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cancer Ther (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/1535-7163.MCT-23-0144"}], "href": "https://doi.org/10.1158/1535-7163.MCT-23-0144"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38151817"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38151817"}]}]}]}
NCBI Gene ID 25840
API
Download Associations
Predicted Functions View TMT1A's ARCHS4 Predicted Functions.
Co-expressed Genes View TMT1A's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View TMT1A's ARCHS4 Predicted Functions.

Functional Associations

TMT1A has 1,619 functional associations with biological entities spanning 5 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 19 datasets.

Click the + buttons to view associations for TMT1A from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of TMT1A gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of TMT1A gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of TMT1A gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing TMT1A protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with TMT1A protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
GO Biological Process Annotations 2025 biological processes involving TMT1A gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2025 cellular components containing TMT1A protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by TMT1A gene from the curated GO Molecular Function Annotations 2025 dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with TMT1A gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of TMT1A gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of TMT1A gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
Reactome Pathways 2024 pathways involving TMT1A protein from the Reactome Pathways 2024 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of TMT1A gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of TMT1A gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of TMT1A gene from the RummaGEO Gene Perturbation Signatures dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of TMT1A gene from the Sci-Plex Drug Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of TMT1A protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of TMT1A protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with TMT1A protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.