| Name | TPTEP2-CSNK1E readthrough |
| Description | This locus represents naturally occurring readthrough transcription between the neighboring LOC400927 (transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene) and CSNK1E (casein kinase I isoform epsilon) genes on chromosome 22. The readthrough transcript encodes the same protein as the downstream gene product (casein kinase I isoform epsilon). [provided by RefSeq, Feb 2014] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe TPTEP2‐CSNK1E gene product appears to drive pathogenic phosphorylation events that promote neurodegenerative proteinopathies. In a Drosophila model of TDP‐43 proteinopathy, enhancement of toxicity by overexpressed TDP‐43(Q331K) was observed upon coexpression with doubletime (the fly homolog of casein kinase Iε, encoded by CSNK1E), which increased phosphorylation at the disease‐associated Ser409/410 epitope and promoted the assembly of high–molecular weight toxic oligomers. These findings support a critical role for the CSNK1E portion of TPTEP2‐CSNK1E in modulating TDP‐43 phosphorylation and toxicity in vivo."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn contrast to the post–translational regulatory role of CSNK1E in neurodegeneration, several studies have characterized members of the BTB–C2H2 zinc finger family—particularly ZNF131—as pivotal transcriptional regulators in diverse cellular contexts. Detailed analyses have revealed that ZNF131 exists as alternatively spliced isoforms expressed predominantly in the developing and adult central nervous system, where it influences gene transcription through both activation and repression mechanisms."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "2", "end_ref": "4"}]}, {"type": "t", "text": " \n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond neural development, ZNF131 has been implicated in the regulation of cell cycle progression, immunoglobulin gene rearrangement during lymphocyte development, and even oncogenic signaling in hepatocellular carcinoma via transcriptional control of downstream effectors such as PAIP1 and Cyclin D1."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "9"}]}, {"type": "t", "text": " This collection of studies underscores that while transcription factors like ZNF131 regulate gene expression programs essential for cellular differentiation and proliferation, the kinase activity contributed by CSNK1E within TPTEP2‐CSNK1E exerts a distinct influence by modulating protein phosphorylation events that may trigger or exacerbate neurodegenerative cascades.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Darshana K Choksi, Bidisha Roy, Shreyasi Chatterjee, et al. "}, {"type": "b", "children": [{"type": "t", "text": "TDP-43 Phosphorylation by casein kinase Iε promotes oligomerization and enhances toxicity in vivo."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddt498"}], "href": "https://doi.org/10.1093/hmg/ddt498"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24105464"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24105464"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "R Trappe, P Buddenberg, J Uedelhoven, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The murine BTB/POZ zinc finger gene Znf131: predominant expression in the developing central nervous system, in adult brain, testis, and thymus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0006-291x(02)00850-1"}], "href": "https://doi.org/10.1016/s0006-291x(02"}, {"type": "t", "text": "00850-1) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12163020"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12163020"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Nickett S Donaldson, Yasmin Daniel, Kevin F Kelly, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Nuclear trafficking of the POZ-ZF protein Znf131."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochim Biophys Acta (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbamcr.2006.12.005"}], "href": "https://doi.org/10.1016/j.bbamcr.2006.12.005"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17306895"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17306895"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Nickett S Donaldson, Curtis L Nordgaard, Christina C Pierre, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Kaiso regulates Znf131-mediated transcriptional activation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Cell Res (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.yexcr.2010.03.011"}], "href": "https://doi.org/10.1016/j.yexcr.2010.03.011"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20303951"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20303951"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Tomohiro Iguchi, Kazuhisa Aoki, Tomokatsu Ikawa, et al. "}, {"type": "b", "children": [{"type": "t", "text": "BTB-ZF Protein Znf131 Regulates Cell Growth of Developing and Mature T Cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.1500602"}], "href": "https://doi.org/10.4049/jimmunol.1500602"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26136427"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26136427"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Shaiya C Robinson, Nickett S Donaldson-Kabwe, Anna Dvorkin-Gheva, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The POZ-ZF transcription factor Znf131 is implicated as a regulator of Kaiso-mediated biological processes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2017.09.007"}], "href": "https://doi.org/10.1016/j.bbrc.2017.09.007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28882591"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28882591"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Tomohiro Iguchi, Emako Miyauchi, Sumiko Watanabe, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A BTB-ZF protein, ZNF131, is required for early B cell development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2018.05.044"}], "href": "https://doi.org/10.1016/j.bbrc.2018.05.044"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29750959"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29750959"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Görkem Garipler, Congyi Lu, Alexis Morrissey, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The BTB transcription factors ZBTB11 and ZFP131 maintain pluripotency by repressing pro-differentiation genes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2022.110524"}], "href": "https://doi.org/10.1016/j.celrep.2022.110524"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35294876"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35294876"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Guozhi Yin, Siying Jia, Youju Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "YAP1-activated ZNF131 promotes hepatocellular carcinoma cell proliferation through transcriptional regulation of PAIP1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Arch Biochem Biophys (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.abb.2024.109921"}], "href": "https://doi.org/10.1016/j.abb.2024.109921"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38341068"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38341068"}]}]}]}
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| NCBI Gene ID | 102800317 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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TPTEP2-CSNK1E has 605 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.
Click the + buttons to view associations for TPTEP2-CSNK1E from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of TPTEP2-CSNK1E gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with TPTEP2-CSNK1E protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with TPTEP2-CSNK1E gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of TPTEP2-CSNK1E gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| KEGG Pathways 2026 | pathways involving TPTEP2-CSNK1E protein from the KEGG Pathways 2026 dataset. | |
| NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles | drug perturbations changing expression of TPTEP2-CSNK1E gene from the NIBR DRUG-seq U2OS MoA Box dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of TPTEP2-CSNK1E gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of TPTEP2-CSNK1E gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of TPTEP2-CSNK1E gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Tahoe Therapeutics Tahoe 100M Perturbation Atlas | drug perturbations changing expression of TPTEP2-CSNK1E gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with TPTEP2-CSNK1E protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |