TRMT9B Gene

Name tRNA methyltransferase 9B (putative)
Description Enables tRNA methyltransferase activity. Predicted to be involved in tRNA methylation and tRNA wobble uridine modification. Predicted to be active in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent studies have identified the tRNA methyltransferase TRMT9B (also known as hTRM9L or KIAA1456) as a key regulator of cancer cell growth through its role in modifying tRNA and thereby controlling translation. In several carcinomas, including those of the breast, bladder, colorectal, cervix, and testis, loss of TRMT9B expression correlates with tumor progression. Re-expression of TRMT9B in colon carcinoma cells was shown to dramatically suppress tumor growth in vivo by reducing proliferation, inducing a senescence-like G0/G1 arrest, and up-regulating the RB-interacting protein LIN9. In addition, TRMT9B restoration altered the cellular response to hypoxia, impairing the HIF1-α–dependent induction of GLUT1, and rendered TRMT9B-deficient tumor cells more sensitive to aminoglycoside antibiotics through changes in tRNA modification levels."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nComplementary investigations in ovarian cancer cells have shown that over-expression of TRMT9B (KIAA1456) leads to a significant inhibition of cell proliferation and promotes the arrest of cells in the G1 phase of the cell cycle. These results reinforce the tumor suppressor role of TRMT9B and its critical involvement in modulating the cell cycle across multiple cancer types."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ulrike Begley, Maria Soledad Sosa, Alvaro Avivar-Valderas, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A human tRNA methyltransferase 9-like protein prevents tumour growth by regulating LIN9 and HIF1-α."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO Mol Med (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/emmm.201201161"}], "href": "https://doi.org/10.1002/emmm.201201161"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23381944"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23381944"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Huaimei Chen, Jia Wang, Yingfeng Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "[Overexpression of KIAA1456 inhibits the proliferation of HO8910PM cells]."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Xi Bao Yu Fen Zi Mian Yi Xue Za Zhi (2016)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27609572"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27609572"}]}]}]}
NCBI Gene ID 57604
API
Download Associations
Predicted Functions View TRMT9B's ARCHS4 Predicted Functions.
Co-expressed Genes View TRMT9B's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View TRMT9B's ARCHS4 Predicted Functions.

Functional Associations

TRMT9B has 1,381 functional associations with biological entities spanning 6 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 25 datasets.

Click the + buttons to view associations for TRMT9B from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of TRMT9B gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of TRMT9B gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CellMarker Gene-Cell Type Associations cell types associated with TRMT9B gene from the CellMarker Gene-Cell Type Associations dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of TRMT9B gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with TRMT9B protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with TRMT9B gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with TRMT9B gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2025 biological processes involving TRMT9B gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2025 cellular components containing TRMT9B protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by TRMT9B gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of TRMT9B gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of TRMT9B gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of TRMT9B gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with TRMT9B gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
IMPC Knockout Mouse Phenotypes phenotypes of mice caused by TRMT9B gene knockout from the IMPC Knockout Mouse Phenotypes dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of TRMT9B gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of TRMT9B gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of TRMT9B gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
MoTrPAC Rat Endurance Exercise Training tissue samples with high or low expression of TRMT9B gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset.
Reactome Pathways 2024 pathways involving TRMT9B protein from the Reactome Pathways 2024 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of TRMT9B gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of TRMT9B gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of TRMT9B gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of TRMT9B protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with TRMT9B protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.