TTTY23 Gene

Name testis-specific transcript, Y-linked 23 (non-protein coding)
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe four abstracts collectively focus on primary cilium‐associated proteins that are implicated in polycystic kidney disease (PKD), yet none of them directly mention or characterize TTTY23. Instead, the studies highlight proteins such as polycystin‐1, polycystin‐2, cystin, and Kif12 that are crucial for the formation, maintenance, and function of the primary cilium in renal epithelia. For instance, one study demonstrated that polycystin‐1 and polycystin‐2 co‐localize with ciliary proteins such as polaris and cystin in kidney collecting duct cells, suggesting a central role for the cilium in normal renal physiology and disease prevention."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAnother study dissected the post‐translational modification and targeting signals for cystin, showing that N‐myristoylation and a specific AxEGG motif are critical for its proper localization within the primary cilium; disruption of these motifs may contribute to cyst formation in PKD."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nA further investigation revealed that cystin interacts with the growth suppressor necdin to modulate Myc expression, implying that an imbalance in this regulatory complex could underlie the renal cystic phenotype seen in the murine ARPKD model."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFinally, genetic mapping in a mouse PKD model identified disease‐modifying loci with one candidate, Kif12, encoding a cilium‐associated protein whose expression profile parallels that of Cys1. This reinforces the concept that proper ciliary localization and function of these proteins are essential for renal homeostasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, while these abstracts robustly describe the roles of multiple cilia‐related proteins in kidney function and cystogenesis, they do not provide any information on TTTY23. Thus, based on the provided literature, the function of TTTY23 remains unaddressed and undetermined.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Bradley K Yoder, Xiaoying Hou, Lisa M Guay-Woodford "}, {"type": "b", "children": [{"type": "t", "text": "The polycystic kidney disease proteins, polycystin-1, polycystin-2, polaris, and cystin, are co-localized in renal cilia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Am Soc Nephrol (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/01.asn.0000029587.47950.25"}], "href": "https://doi.org/10.1097/01.asn.0000029587.47950.25"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12239239"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12239239"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Binli Tao, Su Bu, Zhihua Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cystin localizes to primary cilia via membrane microdomains and a targeting motif."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Am Soc Nephrol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1681/ASN.2009020188"}], "href": "https://doi.org/10.1681/ASN.2009020188"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19850956"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19850956"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Maoqing Wu, Chaozhe Yang, Binli Tao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The ciliary protein cystin forms a regulatory complex with necdin to modulate Myc expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0083062"}], "href": "https://doi.org/10.1371/journal.pone.0083062"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24349431"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24349431"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Michal Mrug, Juling Zhou, Chaozhe Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic and Informatic Analyses Implicate Kif12 as a Candidate Gene within the Mpkd2 Locus That Modulates Renal Cystic Disease Severity in the Cys1cpk Mouse."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0135678"}], "href": "https://doi.org/10.1371/journal.pone.0135678"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26295839"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26295839"}]}]}]}
Synonyms NCRNA00148, TTTY23B
NCBI Gene ID 252955
API
Download Associations
Predicted Functions View TTTY23's ARCHS4 Predicted Functions.
Co-expressed Genes View TTTY23's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View TTTY23's ARCHS4 Predicted Functions.

Functional Associations

TTTY23 has 162 functional associations with biological entities spanning 5 categories (molecular profile, organism, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.

Click the + buttons to view associations for TTTY23 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of TTTY23 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of TTTY23 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of TTTY23 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of TTTY23 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of TTTY23 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of TTTY23 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of TTTY23 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of TTTY23 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of TTTY23 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of TTTY23 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.